Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27385

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27375 and ABID97_RS27380 overlap by 4 nucleotidesABID97_RS27380 and ABID97_RS27385 overlap by 4 nucleotidesABID97_RS27385 and ABID97_RS27390 are separated by 1 nucleotidesABID97_RS27390 and ABID97_RS27395 are separated by 14 nucleotides ABID97_RS27375: ABID97_RS27375 - acetyl-CoA carboxylase biotin carboxylase subunit, at 392,695 to 394,047 _RS27375 ABID97_RS27380: ABID97_RS27380 - 5-oxoprolinase subunit PxpB, at 394,044 to 394,715 _RS27380 ABID97_RS27385: ABID97_RS27385 - biotin-dependent carboxyltransferase family protein, at 394,712 to 395,701 _RS27385 ABID97_RS27390: ABID97_RS27390 - biotin/lipoyl-containing protein, at 395,703 to 396,116 _RS27390 ABID97_RS27395: ABID97_RS27395 - 5-oxoprolinase subunit PxpA, at 396,131 to 396,895 _RS27395 Position (kb) 394 395 396Strain fitness (log2 ratio) -1 0 1at 394.444 kb on - strand, within ABID97_RS27380at 395.317 kb on + strand, within ABID97_RS27385

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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394,444 - ABID97_RS27380 0.60 -1.2
395,317 + ABID97_RS27385 0.61 -0.3

Or see this region's nucleotide sequence