Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26710 and ABID97_RS26715 are separated by 64 nucleotides ABID97_RS26715 and ABID97_RS26720 are separated by 55 nucleotides ABID97_RS26720 and ABID97_RS26725 are separated by 129 nucleotides
ABID97_RS26710: ABID97_RS26710 - Ku protein, at 265,995 to 266,933
_RS26710
ABID97_RS26715: ABID97_RS26715 - DUF4337 domain-containing protein, at 266,998 to 267,630
_RS26715
ABID97_RS26720: ABID97_RS26720 - LysR substrate-binding domain-containing protein, at 267,686 to 268,630
_RS26720
ABID97_RS26725: ABID97_RS26725 - amidase, at 268,760 to 270,217
_RS26725
Position (kb) 267
268
269 Strain fitness (log2 ratio) -1
0
1 at 267.350 kb on + strand, within ABID97_RS26715 at 267.401 kb on + strand, within ABID97_RS26715 at 267.401 kb on + strand, within ABID97_RS26715 at 267.402 kb on - strand, within ABID97_RS26715 at 267.437 kb on + strand, within ABID97_RS26715 at 267.438 kb on - strand, within ABID97_RS26715 at 267.438 kb on - strand, within ABID97_RS26715 at 267.672 kb on + strand at 267.673 kb on - strand at 268.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 267,350 + ABID97_RS26715 0.56 -0.8 267,401 + ABID97_RS26715 0.64 -0.4 267,401 + ABID97_RS26715 0.64 -0.5 267,402 - ABID97_RS26715 0.64 +0.4 267,437 + ABID97_RS26715 0.69 +0.0 267,438 - ABID97_RS26715 0.70 -0.3 267,438 - ABID97_RS26715 0.70 +0.2 267,672 + -1.2 267,673 - -0.7 268,728 - -1.0
Or see this region's nucleotide sequence