Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26570

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26565 and ABID97_RS26570 are separated by 12 nucleotidesABID97_RS26570 and ABID97_RS26575 are separated by 51 nucleotides ABID97_RS26565: ABID97_RS26565 - NAD(P)/FAD-dependent oxidoreductase, at 234,969 to 236,303 _RS26565 ABID97_RS26570: ABID97_RS26570 - class I poly(R)-hydroxyalkanoic acid synthase, at 236,316 to 237,785 _RS26570 ABID97_RS26575: ABID97_RS26575 - acetyl-CoA C-acetyltransferase, at 237,837 to 239,021 _RS26575 Position (kb) 236 237 238Strain fitness (log2 ratio) -1 0 1 2at 236.187 kb on + strandat 237.231 kb on + strand, within ABID97_RS26570at 237.232 kb on - strand, within ABID97_RS26570at 237.325 kb on - strand, within ABID97_RS26570at 237.333 kb on + strand, within ABID97_RS26570at 237.349 kb on - strand, within ABID97_RS26570at 237.439 kb on - strand, within ABID97_RS26570at 237.762 kb on + strandat 237.762 kb on + strandat 238.342 kb on - strand, within ABID97_RS26575

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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236,187 + +0.1
237,231 + ABID97_RS26570 0.62 +0.5
237,232 - ABID97_RS26570 0.62 +2.2
237,325 - ABID97_RS26570 0.69 -1.6
237,333 + ABID97_RS26570 0.69 +0.3
237,349 - ABID97_RS26570 0.70 +2.1
237,439 - ABID97_RS26570 0.76 -0.1
237,762 + -0.6
237,762 + -0.7
238,342 - ABID97_RS26575 0.43 -0.1

Or see this region's nucleotide sequence