Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26310 and ABID97_RS26315 are separated by 20 nucleotides ABID97_RS26315 and ABID97_RS26320 overlap by 4 nucleotides ABID97_RS26320 and ABID97_RS26325 are separated by 6 nucleotides ABID97_RS26325 and ABID97_RS26330 are separated by 43 nucleotides
ABID97_RS26310: ABID97_RS26310 - PAS domain-containing protein, at 185,688 to 187,202
_RS26310
ABID97_RS26315: ABID97_RS26315 - malonic semialdehyde reductase, at 187,223 to 187,813
_RS26315
ABID97_RS26320: ABID97_RS26320 - alpha/beta hydrolase fold domain-containing protein, at 187,810 to 188,646
_RS26320
ABID97_RS26325: ABID97_RS26325 - 4-hydroxy-tetrahydrodipicolinate synthase, at 188,653 to 189,546
_RS26325
ABID97_RS26330: ABID97_RS26330 - ABC transporter ATP-binding protein, at 189,590 to 190,405
_RS26330
Position (kb) 187
188
189 Strain fitness (log2 ratio) -1
0
1 at 186.843 kb on - strand, within ABID97_RS26310 at 186.861 kb on - strand, within ABID97_RS26310 at 187.422 kb on + strand, within ABID97_RS26315 at 187.423 kb on - strand, within ABID97_RS26315 at 188.340 kb on - strand, within ABID97_RS26320 at 188.438 kb on + strand, within ABID97_RS26320 at 188.439 kb on - strand, within ABID97_RS26320 at 188.439 kb on - strand, within ABID97_RS26320 at 188.439 kb on - strand, within ABID97_RS26320 at 188.655 kb on - strand at 189.014 kb on + strand, within ABID97_RS26325 at 189.137 kb on + strand, within ABID97_RS26325 at 189.138 kb on - strand, within ABID97_RS26325 at 189.180 kb on - strand, within ABID97_RS26325 at 189.443 kb on + strand, within ABID97_RS26325 at 189.444 kb on - strand, within ABID97_RS26325 at 189.444 kb on - strand, within ABID97_RS26325 at 189.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 186,843 - ABID97_RS26310 0.76 +0.8 186,861 - ABID97_RS26310 0.77 -0.2 187,422 + ABID97_RS26315 0.34 +0.6 187,423 - ABID97_RS26315 0.34 +0.9 188,340 - ABID97_RS26320 0.63 -0.1 188,438 + ABID97_RS26320 0.75 -0.0 188,439 - ABID97_RS26320 0.75 -1.1 188,439 - ABID97_RS26320 0.75 +0.2 188,439 - ABID97_RS26320 0.75 +0.9 188,655 - +0.1 189,014 + ABID97_RS26325 0.40 -1.6 189,137 + ABID97_RS26325 0.54 -0.2 189,138 - ABID97_RS26325 0.54 -0.2 189,180 - ABID97_RS26325 0.59 +0.6 189,443 + ABID97_RS26325 0.88 +0.2 189,444 - ABID97_RS26325 0.88 +0.8 189,444 - ABID97_RS26325 0.88 -0.7 189,627 + +0.1
Or see this region's nucleotide sequence