Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26215 and ABID97_RS26220 are separated by 156 nucleotides ABID97_RS26220 and ABID97_RS26225 are separated by 256 nucleotides ABID97_RS26225 and ABID97_RS26230 are separated by 136 nucleotides
ABID97_RS26215: ABID97_RS26215 - flavodoxin family protein, at 168,606 to 169,175
_RS26215
ABID97_RS26220: ABID97_RS26220 - hypothetical protein, at 169,332 to 169,748
_RS26220
ABID97_RS26225: ABID97_RS26225 - zinc-dependent alcohol dehydrogenase family protein, at 170,005 to 170,988
_RS26225
ABID97_RS26230: ABID97_RS26230 - LysR family transcriptional regulator, at 171,125 to 172,042
_RS26230
Position (kb) 170
171 Strain fitness (log2 ratio) -2
-1
0
1 at 169.189 kb on - strand at 169.813 kb on + strand at 169.890 kb on - strand at 170.216 kb on + strand, within ABID97_RS26225 at 170.289 kb on + strand, within ABID97_RS26225 at 170.345 kb on + strand, within ABID97_RS26225 at 170.346 kb on - strand, within ABID97_RS26225 at 170.474 kb on + strand, within ABID97_RS26225 at 170.474 kb on + strand, within ABID97_RS26225 at 170.506 kb on + strand, within ABID97_RS26225 at 170.506 kb on + strand, within ABID97_RS26225 at 171.030 kb on + strand at 171.056 kb on - strand at 171.335 kb on - strand, within ABID97_RS26230 at 171.508 kb on - strand, within ABID97_RS26230 at 171.609 kb on - strand, within ABID97_RS26230 at 171.609 kb on - strand, within ABID97_RS26230 at 171.666 kb on + strand, within ABID97_RS26230 at 171.686 kb on - strand, within ABID97_RS26230 at 171.686 kb on - strand, within ABID97_RS26230
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 169,189 - +0.5 169,813 + -0.4 169,890 - -0.6 170,216 + ABID97_RS26225 0.21 +0.0 170,289 + ABID97_RS26225 0.29 -0.4 170,345 + ABID97_RS26225 0.35 -0.4 170,346 - ABID97_RS26225 0.35 -0.3 170,474 + ABID97_RS26225 0.48 -0.6 170,474 + ABID97_RS26225 0.48 -0.1 170,506 + ABID97_RS26225 0.51 -0.5 170,506 + ABID97_RS26225 0.51 -0.7 171,030 + +1.2 171,056 - +1.1 171,335 - ABID97_RS26230 0.23 -0.5 171,508 - ABID97_RS26230 0.42 -1.0 171,609 - ABID97_RS26230 0.53 +0.3 171,609 - ABID97_RS26230 0.53 -2.2 171,666 + ABID97_RS26230 0.59 -0.3 171,686 - ABID97_RS26230 0.61 -0.1 171,686 - ABID97_RS26230 0.61 -0.1
Or see this region's nucleotide sequence