Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25915

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25910 and ABID97_RS25915 are separated by 34 nucleotidesABID97_RS25915 and ABID97_RS25920 are separated by 513 nucleotides ABID97_RS25910: ABID97_RS25910 - FAD-binding oxidoreductase, at 105,003 to 106,295 _RS25910 ABID97_RS25915: ABID97_RS25915 - haloacid dehalogenase type II, at 106,330 to 106,995 _RS25915 ABID97_RS25920: ABID97_RS25920 - GNAT family N-acetyltransferase, at 107,509 to 108,387 _RS25920 Position (kb) 106 107Strain fitness (log2 ratio) -1 0 1at 105.422 kb on - strand, within ABID97_RS25910at 105.449 kb on - strand, within ABID97_RS25910at 105.772 kb on + strand, within ABID97_RS25910at 106.529 kb on + strand, within ABID97_RS25915at 106.529 kb on + strand, within ABID97_RS25915at 106.557 kb on - strand, within ABID97_RS25915at 106.976 kb on + strandat 106.977 kb on - strandat 106.977 kb on - strandat 107.012 kb on + strandat 107.013 kb on - strandat 107.073 kb on + strandat 107.073 kb on + strandat 107.077 kb on + strandat 107.328 kb on - strandat 107.520 kb on + strandat 107.867 kb on - strand, within ABID97_RS25920

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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105,422 - ABID97_RS25910 0.32 +1.4
105,449 - ABID97_RS25910 0.34 -0.3
105,772 + ABID97_RS25910 0.59 -0.9
106,529 + ABID97_RS25915 0.30 -1.1
106,529 + ABID97_RS25915 0.30 -0.3
106,557 - ABID97_RS25915 0.34 -0.3
106,976 + -0.8
106,977 - -1.1
106,977 - -0.8
107,012 + -0.0
107,013 - -0.0
107,073 + -0.1
107,073 + -0.6
107,077 + -0.1
107,328 - -0.1
107,520 + -0.6
107,867 - ABID97_RS25920 0.41 -0.7

Or see this region's nucleotide sequence