Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25745 and ABID97_RS25750 are separated by 31 nucleotides ABID97_RS25750 and ABID97_RS25755 are separated by 5 nucleotides ABID97_RS25755 and ABID97_RS25760 are separated by 1 nucleotides
ABID97_RS25745: ABID97_RS25745 - dipeptide ABC transporter ATP-binding protein, at 69,394 to 70,383
_RS25745
ABID97_RS25750: ABID97_RS25750 - cupin domain-containing protein, at 70,415 to 70,768
_RS25750
ABID97_RS25755: ABID97_RS25755 - glyoxylate/hydroxypyruvate reductase A, at 70,774 to 71,700
_RS25755
ABID97_RS25760: ABID97_RS25760 - threonine synthase, at 71,702 to 73,117
_RS25760
Position (kb) 70
71 Strain fitness (log2 ratio) -1
0
1
2 at 70.099 kb on + strand, within ABID97_RS25745 at 70.164 kb on + strand, within ABID97_RS25745 at 70.439 kb on + strand at 70.583 kb on + strand, within ABID97_RS25750 at 70.583 kb on + strand, within ABID97_RS25750 at 70.584 kb on - strand, within ABID97_RS25750 at 70.584 kb on - strand, within ABID97_RS25750 at 70.761 kb on - strand at 70.766 kb on + strand at 71.066 kb on - strand, within ABID97_RS25755 at 71.110 kb on + strand, within ABID97_RS25755 at 71.110 kb on + strand, within ABID97_RS25755 at 71.110 kb on + strand, within ABID97_RS25755 at 71.111 kb on - strand, within ABID97_RS25755 at 71.708 kb on + strand at 71.709 kb on - strand at 71.755 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 70,099 + ABID97_RS25745 0.71 -0.7 70,164 + ABID97_RS25745 0.78 -0.9 70,439 + +0.7 70,583 + ABID97_RS25750 0.47 -1.1 70,583 + ABID97_RS25750 0.47 -0.3 70,584 - ABID97_RS25750 0.48 +0.3 70,584 - ABID97_RS25750 0.48 -0.5 70,761 - +0.8 70,766 + -1.1 71,066 - ABID97_RS25755 0.31 -0.2 71,110 + ABID97_RS25755 0.36 +1.9 71,110 + ABID97_RS25755 0.36 +0.2 71,110 + ABID97_RS25755 0.36 +0.8 71,111 - ABID97_RS25755 0.36 +0.2 71,708 + +0.0 71,709 - -0.7 71,755 - +0.6
Or see this region's nucleotide sequence