Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25720 and ABID97_RS25725 are separated by 55 nucleotides ABID97_RS25725 and ABID97_RS25730 are separated by 5 nucleotides ABID97_RS25730 and ABID97_RS25735 overlap by 4 nucleotides
ABID97_RS25720: ABID97_RS25720 - FAD-binding oxidoreductase, at 63,422 to 64,747
_RS25720
ABID97_RS25725: ABID97_RS25725 - peptide ABC transporter substrate-binding protein, at 64,803 to 66,476
_RS25725
ABID97_RS25730: ABID97_RS25730 - ABC transporter permease, at 66,482 to 67,438
_RS25730
ABID97_RS25735: ABID97_RS25735 - ABC transporter permease, at 67,435 to 68,322
_RS25735
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -2
-1
0
1 at 64.751 kb on + strand at 64.752 kb on - strand at 64.864 kb on + strand at 64.865 kb on - strand at 64.865 kb on - strand at 65.278 kb on - strand, within ABID97_RS25725 at 65.553 kb on + strand, within ABID97_RS25725 at 65.641 kb on - strand, within ABID97_RS25725 at 65.802 kb on + strand, within ABID97_RS25725 at 66.240 kb on + strand, within ABID97_RS25725 at 66.240 kb on + strand, within ABID97_RS25725 at 66.241 kb on - strand, within ABID97_RS25725 at 66.315 kb on + strand at 66.316 kb on - strand at 66.942 kb on - strand, within ABID97_RS25730 at 67.121 kb on + strand, within ABID97_RS25730
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 64,751 + -0.1 64,752 - +0.2 64,864 + +0.1 64,865 - +0.4 64,865 - +0.5 65,278 - ABID97_RS25725 0.28 +0.3 65,553 + ABID97_RS25725 0.45 +0.1 65,641 - ABID97_RS25725 0.50 -0.4 65,802 + ABID97_RS25725 0.60 -0.8 66,240 + ABID97_RS25725 0.86 +0.8 66,240 + ABID97_RS25725 0.86 +1.4 66,241 - ABID97_RS25725 0.86 +1.6 66,315 + -0.8 66,316 - +0.5 66,942 - ABID97_RS25730 0.48 -2.1 67,121 + ABID97_RS25730 0.67 -0.8
Or see this region's nucleotide sequence