Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23760

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23750 and ABID97_RS23755 are separated by 96 nucleotidesABID97_RS23755 and ABID97_RS23760 are separated by 73 nucleotidesABID97_RS23760 and ABID97_RS23765 are separated by 80 nucleotidesABID97_RS23765 and ABID97_RS23770 overlap by 15 nucleotidesABID97_RS23770 and ABID97_RS23775 are separated by 62 nucleotides ABID97_RS23750: ABID97_RS23750 - ribose-phosphate pyrophosphokinase, at 4,917,562 to 4,918,533 _RS23750 ABID97_RS23755: ABID97_RS23755 - 50S ribosomal protein L25/general stress protein Ctc, at 4,918,630 to 4,919,295 _RS23755 ABID97_RS23760: ABID97_RS23760 - aminoacyl-tRNA hydrolase, at 4,919,369 to 4,920,001 _RS23760 ABID97_RS23765: ABID97_RS23765 - hypothetical protein, at 4,920,082 to 4,920,552 _RS23765 ABID97_RS23770: ABID97_RS23770 - YfhL family 4Fe-4S dicluster ferredoxin, at 4,920,538 to 4,920,843 _RS23770 ABID97_RS23775: ABID97_RS23775 - ABC transporter permease, at 4,920,906 to 4,921,856 _RS23775 Position (kb) 4919 4920 4921Strain fitness (log2 ratio) -1 0 1 2at 4919.293 kb on + strandat 4919.293 kb on + strandat 4919.293 kb on + strandat 4919.293 kb on + strandat 4919.294 kb on - strandat 4920.058 kb on - strandat 4920.087 kb on + strandat 4920.087 kb on + strandat 4920.087 kb on + strandat 4920.088 kb on - strandat 4920.088 kb on - strandat 4920.088 kb on - strandat 4920.088 kb on - strandat 4920.089 kb on + strandat 4920.089 kb on + strandat 4920.089 kb on + strandat 4920.089 kb on + strandat 4920.169 kb on + strand, within ABID97_RS23765at 4920.169 kb on + strand, within ABID97_RS23765at 4920.169 kb on + strand, within ABID97_RS23765at 4920.170 kb on - strand, within ABID97_RS23765at 4920.170 kb on - strand, within ABID97_RS23765at 4920.170 kb on - strand, within ABID97_RS23765at 4920.170 kb on - strand, within ABID97_RS23765at 4920.170 kb on - strand, within ABID97_RS23765at 4920.322 kb on + strand, within ABID97_RS23765at 4920.323 kb on - strand, within ABID97_RS23765at 4920.888 kb on + strandat 4920.889 kb on - strandat 4920.889 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,919,293 + -0.4
4,919,293 + +0.3
4,919,293 + +2.3
4,919,293 + -0.4
4,919,294 - +0.3
4,920,058 - -0.2
4,920,087 + -0.7
4,920,087 + -0.7
4,920,087 + -0.3
4,920,088 - +0.4
4,920,088 - -0.2
4,920,088 - -0.6
4,920,088 - -0.2
4,920,089 + -0.1
4,920,089 + -0.4
4,920,089 + -0.1
4,920,089 + -1.7
4,920,169 + ABID97_RS23765 0.18 -0.2
4,920,169 + ABID97_RS23765 0.18 +0.5
4,920,169 + ABID97_RS23765 0.18 -0.3
4,920,170 - ABID97_RS23765 0.19 +0.1
4,920,170 - ABID97_RS23765 0.19 -0.5
4,920,170 - ABID97_RS23765 0.19 +0.6
4,920,170 - ABID97_RS23765 0.19 -0.8
4,920,170 - ABID97_RS23765 0.19 -0.6
4,920,322 + ABID97_RS23765 0.51 -0.3
4,920,323 - ABID97_RS23765 0.51 -0.6
4,920,888 + +1.0
4,920,889 - +0.3
4,920,889 - +0.2

Or see this region's nucleotide sequence