Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23525

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23515 and ABID97_RS23520 are separated by 29 nucleotidesABID97_RS23520 and ABID97_RS23525 overlap by 1 nucleotidesABID97_RS23525 and ABID97_RS23530 are separated by 3 nucleotides ABID97_RS23515: ABID97_RS23515 - urease subunit gamma, at 4,866,811 to 4,867,113 _RS23515 ABID97_RS23520: ABID97_RS23520 - HupE/UreJ family protein, at 4,867,143 to 4,867,742 _RS23520 ABID97_RS23525: ABID97_RS23525 - urease subunit beta, at 4,867,742 to 4,868,047 _RS23525 ABID97_RS23530: ABID97_RS23530 - urease subunit alpha, at 4,868,051 to 4,869,823 _RS23530 Position (kb) 4867 4868 4869Strain fitness (log2 ratio) -1 0 1at 4866.905 kb on - strand, within ABID97_RS23515at 4868.013 kb on - strand, within ABID97_RS23525at 4868.013 kb on - strand, within ABID97_RS23525at 4868.045 kb on + strandat 4868.075 kb on + strandat 4868.075 kb on + strandat 4868.999 kb on + strand, within ABID97_RS23530at 4869.000 kb on - strand, within ABID97_RS23530

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,866,905 - ABID97_RS23515 0.31 -0.2
4,868,013 - ABID97_RS23525 0.89 -1.6
4,868,013 - ABID97_RS23525 0.89 +0.4
4,868,045 + -0.8
4,868,075 + +0.1
4,868,075 + +1.3
4,868,999 + ABID97_RS23530 0.53 +1.2
4,869,000 - ABID97_RS23530 0.54 +0.4

Or see this region's nucleotide sequence