Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23255 and ABID97_RS23260 are separated by 32 nucleotides ABID97_RS23260 and ABID97_RS23265 are separated by 23 nucleotides ABID97_RS23265 and ABID97_RS23270 overlap by 4 nucleotides ABID97_RS23270 and ABID97_RS23275 overlap by 4 nucleotides
ABID97_RS23255: ABID97_RS23255 - 3-dehydroquinate synthase, at 4,808,912 to 4,810,024
_RS23255
ABID97_RS23260: ABID97_RS23260 - shikimate kinase, at 4,810,057 to 4,810,605
_RS23260
ABID97_RS23265: ABID97_RS23265 - type IV pilus secretin PilQ, at 4,810,629 to 4,812,785
_RS23265
ABID97_RS23270: ABID97_RS23270 - pilus assembly protein PilP, at 4,812,782 to 4,813,327
_RS23270
ABID97_RS23275: ABID97_RS23275 - type 4a pilus biogenesis protein PilO, at 4,813,324 to 4,814,004
_RS23275
Position (kb) 4810
4811
4812
4813 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4810.652 kb on + strand at 4810.733 kb on - strand at 4810.733 kb on - strand at 4810.793 kb on + strand at 4810.794 kb on - strand at 4810.877 kb on + strand, within ABID97_RS23265 at 4810.877 kb on + strand, within ABID97_RS23265 at 4811.650 kb on + strand, within ABID97_RS23265 at 4811.650 kb on + strand, within ABID97_RS23265 at 4811.650 kb on + strand, within ABID97_RS23265 at 4811.651 kb on - strand, within ABID97_RS23265 at 4811.972 kb on - strand, within ABID97_RS23265 at 4812.433 kb on + strand, within ABID97_RS23265 at 4812.433 kb on + strand, within ABID97_RS23265 at 4812.434 kb on - strand, within ABID97_RS23265 at 4812.434 kb on - strand, within ABID97_RS23265 at 4812.767 kb on + strand at 4812.887 kb on - strand, within ABID97_RS23270 at 4812.887 kb on - strand, within ABID97_RS23270 at 4812.904 kb on - strand, within ABID97_RS23270 at 4812.904 kb on - strand, within ABID97_RS23270 at 4812.904 kb on - strand, within ABID97_RS23270 at 4812.919 kb on - strand, within ABID97_RS23270 at 4812.939 kb on + strand, within ABID97_RS23270 at 4812.939 kb on + strand, within ABID97_RS23270 at 4812.940 kb on - strand, within ABID97_RS23270 at 4812.983 kb on - strand, within ABID97_RS23270 at 4813.158 kb on + strand, within ABID97_RS23270 at 4813.159 kb on - strand, within ABID97_RS23270 at 4813.391 kb on + strand at 4813.391 kb on + strand at 4813.392 kb on - strand, within ABID97_RS23275 at 4813.392 kb on - strand, within ABID97_RS23275 at 4813.392 kb on - strand, within ABID97_RS23275 at 4813.392 kb on - strand, within ABID97_RS23275 at 4813.392 kb on - strand, within ABID97_RS23275 at 4813.560 kb on - strand, within ABID97_RS23275 at 4813.562 kb on + strand, within ABID97_RS23275 at 4813.563 kb on - strand, within ABID97_RS23275 at 4813.563 kb on - strand, within ABID97_RS23275 at 4813.563 kb on - strand, within ABID97_RS23275 at 4813.563 kb on - strand, within ABID97_RS23275 at 4813.697 kb on + strand, within ABID97_RS23275 at 4813.697 kb on + strand, within ABID97_RS23275 at 4813.697 kb on + strand, within ABID97_RS23275 at 4813.697 kb on - strand, within ABID97_RS23275 at 4813.698 kb on - strand, within ABID97_RS23275 at 4813.698 kb on - strand, within ABID97_RS23275 at 4813.783 kb on - strand, within ABID97_RS23275
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 4,810,652 + -0.7 4,810,733 - +0.6 4,810,733 - -0.4 4,810,793 + -0.7 4,810,794 - -0.8 4,810,877 + ABID97_RS23265 0.11 -1.3 4,810,877 + ABID97_RS23265 0.11 -1.3 4,811,650 + ABID97_RS23265 0.47 -1.8 4,811,650 + ABID97_RS23265 0.47 -0.8 4,811,650 + ABID97_RS23265 0.47 -1.6 4,811,651 - ABID97_RS23265 0.47 -0.5 4,811,972 - ABID97_RS23265 0.62 -0.0 4,812,433 + ABID97_RS23265 0.84 -2.2 4,812,433 + ABID97_RS23265 0.84 -0.3 4,812,434 - ABID97_RS23265 0.84 -1.0 4,812,434 - ABID97_RS23265 0.84 -1.6 4,812,767 + -1.4 4,812,887 - ABID97_RS23270 0.19 -1.6 4,812,887 - ABID97_RS23270 0.19 -0.8 4,812,904 - ABID97_RS23270 0.22 -1.2 4,812,904 - ABID97_RS23270 0.22 -0.4 4,812,904 - ABID97_RS23270 0.22 -1.1 4,812,919 - ABID97_RS23270 0.25 -1.5 4,812,939 + ABID97_RS23270 0.29 -1.2 4,812,939 + ABID97_RS23270 0.29 -2.9 4,812,940 - ABID97_RS23270 0.29 -1.6 4,812,983 - ABID97_RS23270 0.37 -1.6 4,813,158 + ABID97_RS23270 0.69 -1.1 4,813,159 - ABID97_RS23270 0.69 -2.0 4,813,391 + -1.4 4,813,391 + -0.6 4,813,392 - ABID97_RS23275 0.10 -2.6 4,813,392 - ABID97_RS23275 0.10 -1.3 4,813,392 - ABID97_RS23275 0.10 -1.4 4,813,392 - ABID97_RS23275 0.10 -1.2 4,813,392 - ABID97_RS23275 0.10 -0.4 4,813,560 - ABID97_RS23275 0.35 -2.2 4,813,562 + ABID97_RS23275 0.35 -0.5 4,813,563 - ABID97_RS23275 0.35 -2.9 4,813,563 - ABID97_RS23275 0.35 +0.3 4,813,563 - ABID97_RS23275 0.35 -1.3 4,813,563 - ABID97_RS23275 0.35 -0.6 4,813,697 + ABID97_RS23275 0.55 -1.4 4,813,697 + ABID97_RS23275 0.55 -2.1 4,813,697 + ABID97_RS23275 0.55 -0.9 4,813,697 - ABID97_RS23275 0.55 -2.7 4,813,698 - ABID97_RS23275 0.55 +0.1 4,813,698 - ABID97_RS23275 0.55 +1.3 4,813,783 - ABID97_RS23275 0.67 -1.2
Or see this region's nucleotide sequence