Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22810

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22805 and ABID97_RS22810 are separated by 34 nucleotidesABID97_RS22810 and ABID97_RS22815 are separated by 104 nucleotides ABID97_RS22805: ABID97_RS22805 - 1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 4,720,771 to 4,721,874 _RS22805 ABID97_RS22810: ABID97_RS22810 - ABC transporter substrate-binding protein, at 4,721,909 to 4,723,054 _RS22810 ABID97_RS22815: ABID97_RS22815 - branched-chain amino acid ABC transporter permease, at 4,723,159 to 4,724,187 _RS22815 Position (kb) 4721 4722 4723 4724Strain fitness (log2 ratio) -1 0 1at 4721.275 kb on + strand, within ABID97_RS22805at 4721.276 kb on - strand, within ABID97_RS22805at 4721.413 kb on + strand, within ABID97_RS22805at 4721.414 kb on - strand, within ABID97_RS22805at 4722.086 kb on + strand, within ABID97_RS22810at 4722.087 kb on - strand, within ABID97_RS22810at 4722.608 kb on + strand, within ABID97_RS22810at 4722.776 kb on + strand, within ABID97_RS22810at 4723.153 kb on - strandat 4723.159 kb on - strandat 4723.961 kb on - strand, within ABID97_RS22815at 4723.963 kb on + strand, within ABID97_RS22815at 4723.963 kb on + strand, within ABID97_RS22815at 4723.963 kb on + strand, within ABID97_RS22815at 4723.964 kb on - strand, within ABID97_RS22815

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,721,275 + ABID97_RS22805 0.46 -0.6
4,721,276 - ABID97_RS22805 0.46 +0.0
4,721,413 + ABID97_RS22805 0.58 -1.6
4,721,414 - ABID97_RS22805 0.58 +1.0
4,722,086 + ABID97_RS22810 0.15 +0.0
4,722,087 - ABID97_RS22810 0.16 +0.1
4,722,608 + ABID97_RS22810 0.61 +1.5
4,722,776 + ABID97_RS22810 0.76 +0.1
4,723,153 - +0.8
4,723,159 - -0.6
4,723,961 - ABID97_RS22815 0.78 +0.1
4,723,963 + ABID97_RS22815 0.78 +0.3
4,723,963 + ABID97_RS22815 0.78 +0.3
4,723,963 + ABID97_RS22815 0.78 -1.6
4,723,964 - ABID97_RS22815 0.78 +0.4

Or see this region's nucleotide sequence