Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22430

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22425 and ABID97_RS22430 are separated by 44 nucleotidesABID97_RS22430 and ABID97_RS22435 are separated by 20 nucleotidesABID97_RS22435 and ABID97_RS22440 are separated by 43 nucleotides ABID97_RS22425: ABID97_RS22425 - tripartite tricarboxylate transporter substrate binding protein, at 4,645,856 to 4,646,866 _RS22425 ABID97_RS22430: ABID97_RS22430 - cystathionine beta-lyase, at 4,646,911 to 4,648,128 _RS22430 ABID97_RS22435: ABID97_RS22435 - alpha/beta fold hydrolase, at 4,648,149 to 4,648,997 _RS22435 ABID97_RS22440: ABID97_RS22440 - DUF1161 domain-containing protein, at 4,649,041 to 4,649,373 _RS22440 Position (kb) 4646 4647 4648 4649Strain fitness (log2 ratio) -2 -1 0 1at 4646.154 kb on - strand, within ABID97_RS22425at 4646.357 kb on + strand, within ABID97_RS22425at 4646.358 kb on - strand, within ABID97_RS22425at 4646.358 kb on - strand, within ABID97_RS22425at 4646.358 kb on - strand, within ABID97_RS22425at 4646.358 kb on - strand, within ABID97_RS22425at 4646.445 kb on - strand, within ABID97_RS22425at 4646.445 kb on - strand, within ABID97_RS22425at 4646.648 kb on + strand, within ABID97_RS22425at 4646.694 kb on - strand, within ABID97_RS22425at 4646.874 kb on + strandat 4646.875 kb on - strandat 4646.875 kb on - strandat 4646.875 kb on - strandat 4647.431 kb on - strand, within ABID97_RS22430at 4647.523 kb on + strand, within ABID97_RS22430at 4647.575 kb on - strand, within ABID97_RS22430at 4648.756 kb on + strand, within ABID97_RS22435at 4648.757 kb on - strand, within ABID97_RS22435at 4648.799 kb on - strand, within ABID97_RS22435at 4648.799 kb on - strand, within ABID97_RS22435at 4648.840 kb on + strand, within ABID97_RS22435at 4648.840 kb on + strand, within ABID97_RS22435at 4648.841 kb on - strand, within ABID97_RS22435at 4649.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,646,154 - ABID97_RS22425 0.29 +0.4
4,646,357 + ABID97_RS22425 0.50 -0.3
4,646,358 - ABID97_RS22425 0.50 -0.3
4,646,358 - ABID97_RS22425 0.50 +0.9
4,646,358 - ABID97_RS22425 0.50 +0.2
4,646,358 - ABID97_RS22425 0.50 -0.4
4,646,445 - ABID97_RS22425 0.58 -0.2
4,646,445 - ABID97_RS22425 0.58 +0.7
4,646,648 + ABID97_RS22425 0.78 -0.5
4,646,694 - ABID97_RS22425 0.83 +0.4
4,646,874 + +0.1
4,646,875 - -0.6
4,646,875 - +0.3
4,646,875 - -0.5
4,647,431 - ABID97_RS22430 0.43 -1.3
4,647,523 + ABID97_RS22430 0.50 -1.9
4,647,575 - ABID97_RS22430 0.55 -1.9
4,648,756 + ABID97_RS22435 0.71 +1.6
4,648,757 - ABID97_RS22435 0.72 -0.6
4,648,799 - ABID97_RS22435 0.77 +0.6
4,648,799 - ABID97_RS22435 0.77 -0.2
4,648,840 + ABID97_RS22435 0.81 -0.0
4,648,840 + ABID97_RS22435 0.81 +0.3
4,648,841 - ABID97_RS22435 0.82 +0.1
4,649,042 + -0.2

Or see this region's nucleotide sequence