Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22345 and ABID97_RS22350 overlap by 1 nucleotides ABID97_RS22350 and ABID97_RS22355 are separated by 8 nucleotides ABID97_RS22355 and ABID97_RS22360 are separated by 10 nucleotides
ABID97_RS22345: ABID97_RS22345 - ABC transporter substrate-binding protein, at 4,631,804 to 4,632,838
_RS22345
ABID97_RS22350: ABID97_RS22350 - ABC transporter ATP-binding protein, at 4,632,838 to 4,633,698
_RS22350
ABID97_RS22355: ABID97_RS22355 - ABC transporter permease, at 4,633,707 to 4,634,477
_RS22355
ABID97_RS22360: ABID97_RS22360 - nucleoside deaminase, at 4,634,488 to 4,634,964
_RS22360
Position (kb) 4632
4633
4634 Strain fitness (log2 ratio) -1
0
1
2 at 4631.963 kb on + strand, within ABID97_RS22345 at 4631.964 kb on - strand, within ABID97_RS22345 at 4632.141 kb on - strand, within ABID97_RS22345 at 4632.232 kb on - strand, within ABID97_RS22345 at 4632.434 kb on + strand, within ABID97_RS22345 at 4632.443 kb on + strand, within ABID97_RS22345 at 4632.458 kb on + strand, within ABID97_RS22345 at 4632.780 kb on + strand at 4633.222 kb on + strand, within ABID97_RS22350 at 4633.223 kb on - strand, within ABID97_RS22350 at 4633.507 kb on + strand, within ABID97_RS22350 at 4633.588 kb on + strand, within ABID97_RS22350 at 4633.589 kb on - strand, within ABID97_RS22350 at 4633.987 kb on - strand, within ABID97_RS22355 at 4633.987 kb on - strand, within ABID97_RS22355 at 4634.232 kb on + strand, within ABID97_RS22355 at 4634.233 kb on - strand, within ABID97_RS22355 at 4634.233 kb on - strand, within ABID97_RS22355 at 4634.323 kb on - strand, within ABID97_RS22355 at 4634.409 kb on + strand at 4634.409 kb on + strand at 4634.409 kb on + strand at 4634.692 kb on + strand, within ABID97_RS22360 at 4634.692 kb on + strand, within ABID97_RS22360
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 4,631,963 + ABID97_RS22345 0.15 +0.9 4,631,964 - ABID97_RS22345 0.15 +0.9 4,632,141 - ABID97_RS22345 0.33 -0.8 4,632,232 - ABID97_RS22345 0.41 -0.7 4,632,434 + ABID97_RS22345 0.61 +0.1 4,632,443 + ABID97_RS22345 0.62 +1.3 4,632,458 + ABID97_RS22345 0.63 -0.3 4,632,780 + +0.3 4,633,222 + ABID97_RS22350 0.45 -0.7 4,633,223 - ABID97_RS22350 0.45 +2.2 4,633,507 + ABID97_RS22350 0.78 -0.7 4,633,588 + ABID97_RS22350 0.87 -1.3 4,633,589 - ABID97_RS22350 0.87 -1.1 4,633,987 - ABID97_RS22355 0.36 +0.6 4,633,987 - ABID97_RS22355 0.36 +0.1 4,634,232 + ABID97_RS22355 0.68 -0.1 4,634,233 - ABID97_RS22355 0.68 -0.4 4,634,233 - ABID97_RS22355 0.68 +0.2 4,634,323 - ABID97_RS22355 0.80 +0.1 4,634,409 + +0.2 4,634,409 + +0.2 4,634,409 + -0.6 4,634,692 + ABID97_RS22360 0.43 +0.6 4,634,692 + ABID97_RS22360 0.43 +0.5
Or see this region's nucleotide sequence