Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21150

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21135 and ABID97_RS21140 overlap by 4 nucleotidesABID97_RS21140 and ABID97_RS21145 are separated by 11 nucleotidesABID97_RS21145 and ABID97_RS21150 are separated by 16 nucleotidesABID97_RS21150 and ABID97_RS21155 are separated by 40 nucleotides ABID97_RS21135: ABID97_RS21135 - glycerophosphodiester phosphodiesterase, at 4,361,959 to 4,362,951 _RS21135 ABID97_RS21140: ABID97_RS21140 - hypothetical protein, at 4,362,948 to 4,363,226 _RS21140 ABID97_RS21145: ABID97_RS21145 - DUF411 domain-containing protein, at 4,363,238 to 4,363,702 _RS21145 ABID97_RS21150: ABID97_RS21150 - FAD-dependent oxidoreductase, at 4,363,719 to 4,365,017 _RS21150 ABID97_RS21155: ABID97_RS21155 - P1 family peptidase, at 4,365,058 to 4,366,083 _RS21155 Position (kb) 4363 4364 4365 4366Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4362.877 kb on + strandat 4363.694 kb on + strandat 4363.695 kb on - strandat 4363.695 kb on - strandat 4364.371 kb on + strand, within ABID97_RS21150at 4364.372 kb on - strand, within ABID97_RS21150at 4364.372 kb on - strand, within ABID97_RS21150at 4364.372 kb on - strand, within ABID97_RS21150at 4364.372 kb on - strand, within ABID97_RS21150at 4364.372 kb on - strand, within ABID97_RS21150at 4364.414 kb on + strand, within ABID97_RS21150at 4364.414 kb on + strand, within ABID97_RS21150at 4364.415 kb on - strand, within ABID97_RS21150at 4364.855 kb on - strand, within ABID97_RS21150at 4364.855 kb on - strand, within ABID97_RS21150at 4365.030 kb on + strandat 4365.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,362,877 + -0.5
4,363,694 + -0.7
4,363,695 - -0.2
4,363,695 - -0.2
4,364,371 + ABID97_RS21150 0.50 -1.6
4,364,372 - ABID97_RS21150 0.50 -2.2
4,364,372 - ABID97_RS21150 0.50 -1.9
4,364,372 - ABID97_RS21150 0.50 -2.0
4,364,372 - ABID97_RS21150 0.50 -1.9
4,364,372 - ABID97_RS21150 0.50 -4.2
4,364,414 + ABID97_RS21150 0.54 -2.6
4,364,414 + ABID97_RS21150 0.54 -0.7
4,364,415 - ABID97_RS21150 0.54 +0.0
4,364,855 - ABID97_RS21150 0.87 -0.7
4,364,855 - ABID97_RS21150 0.87 -2.1
4,365,030 + -0.0
4,365,122 + -1.5

Or see this region's nucleotide sequence