Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20980 and ABID97_RS20985 are separated by 40 nucleotides ABID97_RS20985 and ABID97_RS20990 are separated by 0 nucleotides ABID97_RS20990 and ABID97_RS20995 are separated by 57 nucleotides ABID97_RS20995 and ABID97_RS21000 are separated by 52 nucleotides ABID97_RS21000 and ABID97_RS21005 are separated by 107 nucleotides
ABID97_RS20980: ABID97_RS20980 - transcriptional repressor, at 4,337,741 to 4,338,208
_RS20980
ABID97_RS20985: ABID97_RS20985 - glutathione S-transferase, at 4,338,249 to 4,338,911
_RS20985
ABID97_RS20990: ABID97_RS20990 - enoyl-CoA hydratase/isomerase family protein, at 4,338,912 to 4,339,709
_RS20990
ABID97_RS20995: ABID97_RS20995 - hypothetical protein, at 4,339,767 to 4,340,198
_RS20995
ABID97_RS21000: ABID97_RS21000 - DUF2164 domain-containing protein, at 4,340,251 to 4,340,523
_RS21000
ABID97_RS21005: ABID97_RS21005 - YncE family protein, at 4,340,631 to 4,341,830
_RS21005
Position (kb) 4338
4339
4340 Strain fitness (log2 ratio) -1
0
1 at 4337.943 kb on - strand, within ABID97_RS20980 at 4338.282 kb on + strand at 4338.304 kb on - strand at 4338.304 kb on - strand at 4338.861 kb on + strand at 4338.862 kb on - strand at 4339.051 kb on + strand, within ABID97_RS20990 at 4339.051 kb on + strand, within ABID97_RS20990 at 4339.208 kb on - strand, within ABID97_RS20990 at 4339.572 kb on + strand, within ABID97_RS20990 at 4339.573 kb on - strand, within ABID97_RS20990 at 4339.702 kb on + strand at 4339.769 kb on - strand at 4339.882 kb on + strand, within ABID97_RS20995 at 4339.882 kb on + strand, within ABID97_RS20995 at 4339.883 kb on - strand, within ABID97_RS20995 at 4339.883 kb on - strand, within ABID97_RS20995 at 4339.913 kb on - strand, within ABID97_RS20995 at 4340.053 kb on + strand, within ABID97_RS20995 at 4340.252 kb on + strand at 4340.253 kb on - strand at 4340.253 kb on - strand at 4340.375 kb on + strand, within ABID97_RS21000 at 4340.376 kb on - strand, within ABID97_RS21000 at 4340.376 kb on - strand, within ABID97_RS21000 at 4340.376 kb on - strand, within ABID97_RS21000 at 4340.465 kb on + strand, within ABID97_RS21000 at 4340.570 kb on + strand at 4340.570 kb on + strand at 4340.612 kb on + strand at 4340.612 kb on + strand at 4340.613 kb on - strand at 4340.613 kb on - strand at 4340.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 4,337,943 - ABID97_RS20980 0.43 +0.0 4,338,282 + -0.4 4,338,304 - -0.4 4,338,304 - +0.3 4,338,861 + +0.0 4,338,862 - +0.3 4,339,051 + ABID97_RS20990 0.17 +0.7 4,339,051 + ABID97_RS20990 0.17 -0.1 4,339,208 - ABID97_RS20990 0.37 +0.6 4,339,572 + ABID97_RS20990 0.83 +0.9 4,339,573 - ABID97_RS20990 0.83 +1.1 4,339,702 + +0.2 4,339,769 - -0.6 4,339,882 + ABID97_RS20995 0.27 -0.1 4,339,882 + ABID97_RS20995 0.27 -1.6 4,339,883 - ABID97_RS20995 0.27 -0.6 4,339,883 - ABID97_RS20995 0.27 +1.7 4,339,913 - ABID97_RS20995 0.34 -0.2 4,340,053 + ABID97_RS20995 0.66 +0.3 4,340,252 + -0.8 4,340,253 - +0.7 4,340,253 - +0.3 4,340,375 + ABID97_RS21000 0.45 -0.1 4,340,376 - ABID97_RS21000 0.46 +0.6 4,340,376 - ABID97_RS21000 0.46 +0.1 4,340,376 - ABID97_RS21000 0.46 -0.4 4,340,465 + ABID97_RS21000 0.78 -0.3 4,340,570 + +0.7 4,340,570 + +0.7 4,340,612 + +0.1 4,340,612 + -0.1 4,340,613 - -0.2 4,340,613 - -0.5 4,340,613 - -0.6
Or see this region's nucleotide sequence