Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20005 and ABID97_RS20010 overlap by 4 nucleotides ABID97_RS20010 and ABID97_RS20015 are separated by 25 nucleotides ABID97_RS20015 and ABID97_RS20020 overlap by 101 nucleotides ABID97_RS20020 and ABID97_RS20025 are separated by 124 nucleotides
ABID97_RS20005: ABID97_RS20005 - transglutaminase family protein, at 4,136,910 to 4,137,896
_RS20005
ABID97_RS20010: ABID97_RS20010 - RidA family protein, at 4,137,893 to 4,138,351
_RS20010
ABID97_RS20015: ABID97_RS20015 - hypothetical protein, at 4,138,377 to 4,138,757
_RS20015
ABID97_RS20020: ABID97_RS20020 - LacI family DNA-binding transcriptional regulator, at 4,138,657 to 4,139,682
_RS20020
ABID97_RS20025: ABID97_RS20025 - D-glycerate dehydrogenase, at 4,139,807 to 4,140,790
_RS20025
Position (kb) 4138
4139
4140 Strain fitness (log2 ratio) -1
0
1
2
3 at 4137.702 kb on + strand, within ABID97_RS20005 at 4137.962 kb on + strand, within ABID97_RS20010 at 4139.123 kb on + strand, within ABID97_RS20020 at 4139.123 kb on + strand, within ABID97_RS20020 at 4140.552 kb on + strand, within ABID97_RS20025 at 4140.553 kb on - strand, within ABID97_RS20025
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 4,137,702 + ABID97_RS20005 0.80 -0.2 4,137,962 + ABID97_RS20010 0.15 -0.2 4,139,123 + ABID97_RS20020 0.45 +3.1 4,139,123 + ABID97_RS20020 0.45 +3.0 4,140,552 + ABID97_RS20025 0.76 +0.6 4,140,553 - ABID97_RS20025 0.76 -1.6
Or see this region's nucleotide sequence