Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19610

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19605 and ABID97_RS19610 are separated by 35 nucleotidesABID97_RS19610 and ABID97_RS19615 are separated by 89 nucleotides ABID97_RS19605: ABID97_RS19605 - MFS transporter, at 4,050,171 to 4,051,463 _RS19605 ABID97_RS19610: ABID97_RS19610 - putative hydro-lyase, at 4,051,499 to 4,052,314 _RS19610 ABID97_RS19615: ABID97_RS19615 - LysR family transcriptional regulator, at 4,052,404 to 4,053,309 _RS19615 Position (kb) 4051 4052 4053Strain fitness (log2 ratio) -2 -1 0 1at 4050.502 kb on + strand, within ABID97_RS19605at 4050.502 kb on + strand, within ABID97_RS19605at 4050.502 kb on + strand, within ABID97_RS19605at 4050.502 kb on + strand, within ABID97_RS19605at 4050.586 kb on + strand, within ABID97_RS19605at 4050.587 kb on - strand, within ABID97_RS19605at 4050.694 kb on + strand, within ABID97_RS19605at 4050.694 kb on + strand, within ABID97_RS19605at 4050.823 kb on + strand, within ABID97_RS19605at 4050.911 kb on - strand, within ABID97_RS19605at 4051.189 kb on + strand, within ABID97_RS19605at 4051.190 kb on - strand, within ABID97_RS19605at 4051.325 kb on - strand, within ABID97_RS19605at 4051.327 kb on + strand, within ABID97_RS19605at 4051.632 kb on - strand, within ABID97_RS19610at 4051.857 kb on + strand, within ABID97_RS19610at 4052.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,050,502 + ABID97_RS19605 0.26 +0.8
4,050,502 + ABID97_RS19605 0.26 -0.7
4,050,502 + ABID97_RS19605 0.26 +0.9
4,050,502 + ABID97_RS19605 0.26 -0.0
4,050,586 + ABID97_RS19605 0.32 +0.7
4,050,587 - ABID97_RS19605 0.32 +1.2
4,050,694 + ABID97_RS19605 0.40 +0.1
4,050,694 + ABID97_RS19605 0.40 +0.1
4,050,823 + ABID97_RS19605 0.50 -0.5
4,050,911 - ABID97_RS19605 0.57 +0.9
4,051,189 + ABID97_RS19605 0.79 +1.5
4,051,190 - ABID97_RS19605 0.79 +0.0
4,051,325 - ABID97_RS19605 0.89 +1.5
4,051,327 + ABID97_RS19605 0.89 +0.0
4,051,632 - ABID97_RS19610 0.16 -1.8
4,051,857 + ABID97_RS19610 0.44 -0.1
4,052,291 + +0.3

Or see this region's nucleotide sequence