Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19335 and ABID97_RS19340 overlap by 4 nucleotides ABID97_RS19340 and ABID97_RS19345 overlap by 2 nucleotides ABID97_RS19345 and ABID97_RS19350 are separated by 123 nucleotides ABID97_RS19350 and ABID97_RS19355 are separated by 64 nucleotides
ABID97_RS19335: ABID97_RS19335 - DUF802 domain-containing protein, at 3,989,639 to 3,991,729
_RS19335
ABID97_RS19340: ABID97_RS19340 - DUF3348 domain-containing protein, at 3,991,726 to 3,992,658
_RS19340
ABID97_RS19345: ABID97_RS19345 - AAA family ATPase, at 3,992,657 to 3,995,734
_RS19345
ABID97_RS19350: ABID97_RS19350 - group 1 truncated hemoglobin, at 3,995,858 to 3,996,217
_RS19350
ABID97_RS19355: ABID97_RS19355 - cupin domain-containing protein, at 3,996,282 to 3,996,752
_RS19355
Position (kb)
3992
3993
3994
3995
3996 Strain fitness (log2 ratio)
-1
0
1
2 at 3991.659 kb on + strand at 3991.710 kb on + strand at 3991.711 kb on - strand at 3992.440 kb on + strand, within ABID97_RS19340 at 3992.441 kb on - strand, within ABID97_RS19340 at 3992.441 kb on - strand, within ABID97_RS19340 at 3992.441 kb on - strand, within ABID97_RS19340 at 3992.584 kb on + strand at 3992.584 kb on + strand at 3992.584 kb on + strand at 3992.698 kb on + strand at 3993.327 kb on - strand, within ABID97_RS19345 at 3993.528 kb on - strand, within ABID97_RS19345 at 3993.824 kb on + strand, within ABID97_RS19345 at 3993.825 kb on - strand, within ABID97_RS19345 at 3993.860 kb on + strand, within ABID97_RS19345 at 3993.860 kb on + strand, within ABID97_RS19345 at 3993.861 kb on - strand, within ABID97_RS19345 at 3993.861 kb on - strand, within ABID97_RS19345 at 3993.968 kb on + strand, within ABID97_RS19345 at 3993.968 kb on + strand, within ABID97_RS19345 at 3993.969 kb on - strand, within ABID97_RS19345 at 3993.969 kb on - strand, within ABID97_RS19345 at 3994.061 kb on + strand, within ABID97_RS19345 at 3994.062 kb on - strand, within ABID97_RS19345 at 3994.062 kb on - strand, within ABID97_RS19345 at 3994.637 kb on + strand, within ABID97_RS19345 at 3994.917 kb on + strand, within ABID97_RS19345 at 3995.733 kb on - strand at 3995.802 kb on + strand at 3995.858 kb on - strand at 3995.936 kb on + strand, within ABID97_RS19350 at 3995.936 kb on + strand, within ABID97_RS19350 at 3996.041 kb on + strand, within ABID97_RS19350 at 3996.042 kb on - strand, within ABID97_RS19350 at 3996.185 kb on + strand at 3996.185 kb on + strand at 3996.215 kb on + strand at 3996.718 kb on - strand at 3996.718 kb on - strand at 3996.718 kb on - strand at 3996.718 kb on - strand at 3996.718 kb on - strand at 3996.718 kb on - strand at 3996.718 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 3,991,659 + +0.9 3,991,710 + +0.5 3,991,711 - -0.0 3,992,440 + ABID97_RS19340 0.77 +0.4 3,992,441 - ABID97_RS19340 0.77 +0.1 3,992,441 - ABID97_RS19340 0.77 -1.4 3,992,441 - ABID97_RS19340 0.77 -0.5 3,992,584 + +0.4 3,992,584 + -0.7 3,992,584 + -0.6 3,992,698 + -0.8 3,993,327 - ABID97_RS19345 0.22 +0.3 3,993,528 - ABID97_RS19345 0.28 +0.1 3,993,824 + ABID97_RS19345 0.38 +0.1 3,993,825 - ABID97_RS19345 0.38 +0.1 3,993,860 + ABID97_RS19345 0.39 +0.6 3,993,860 + ABID97_RS19345 0.39 +0.0 3,993,861 - ABID97_RS19345 0.39 -0.2 3,993,861 - ABID97_RS19345 0.39 +0.4 3,993,968 + ABID97_RS19345 0.43 +0.0 3,993,968 + ABID97_RS19345 0.43 +0.2 3,993,969 - ABID97_RS19345 0.43 +1.1 3,993,969 - ABID97_RS19345 0.43 +0.5 3,994,061 + ABID97_RS19345 0.46 +0.1 3,994,062 - ABID97_RS19345 0.46 -0.1 3,994,062 - ABID97_RS19345 0.46 +0.8 3,994,637 + ABID97_RS19345 0.64 +1.9 3,994,917 + ABID97_RS19345 0.73 -0.1 3,995,733 - +1.2 3,995,802 + -0.3 3,995,858 - +1.7 3,995,936 + ABID97_RS19350 0.22 +1.1 3,995,936 + ABID97_RS19350 0.22 +0.9 3,996,041 + ABID97_RS19350 0.51 +0.1 3,996,042 - ABID97_RS19350 0.51 -0.2 3,996,185 + +0.3 3,996,185 + -0.0 3,996,215 + +1.0 3,996,718 - +0.1 3,996,718 - +1.5 3,996,718 - -0.2 3,996,718 - +0.3 3,996,718 - -0.8 3,996,718 - -0.2 3,996,718 - +0.5
Or see this region's nucleotide sequence