Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18765

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18755 and ABID97_RS18760 overlap by 1 nucleotidesABID97_RS18760 and ABID97_RS18765 are separated by 20 nucleotidesABID97_RS18765 and ABID97_RS18770 are separated by 69 nucleotides ABID97_RS18755: ABID97_RS18755 - aconitase family protein, at 3,863,560 to 3,864,414 _RS18755 ABID97_RS18760: ABID97_RS18760 - 3-isopropylmalate dehydratase small subunit, at 3,864,414 to 3,865,050 _RS18760 ABID97_RS18765: ABID97_RS18765 - hypothetical protein, at 3,865,071 to 3,865,277 _RS18765 ABID97_RS18770: ABID97_RS18770 - FAD-dependent oxidoreductase, at 3,865,347 to 3,866,582 _RS18770 Position (kb) 3865 3866Strain fitness (log2 ratio) -1 0 1at 3864.554 kb on + strand, within ABID97_RS18760at 3864.762 kb on - strand, within ABID97_RS18760at 3864.762 kb on - strand, within ABID97_RS18760at 3864.762 kb on - strand, within ABID97_RS18760at 3864.875 kb on - strand, within ABID97_RS18760at 3865.174 kb on + strand, within ABID97_RS18765at 3865.174 kb on + strand, within ABID97_RS18765at 3865.175 kb on - strand, within ABID97_RS18765at 3865.175 kb on - strand, within ABID97_RS18765at 3865.175 kb on - strand, within ABID97_RS18765at 3865.175 kb on - strand, within ABID97_RS18765

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,864,554 + ABID97_RS18760 0.22 -1.2
3,864,762 - ABID97_RS18760 0.55 +0.6
3,864,762 - ABID97_RS18760 0.55 -0.1
3,864,762 - ABID97_RS18760 0.55 +0.2
3,864,875 - ABID97_RS18760 0.72 +0.9
3,865,174 + ABID97_RS18765 0.50 -1.1
3,865,174 + ABID97_RS18765 0.50 +0.1
3,865,175 - ABID97_RS18765 0.50 -0.5
3,865,175 - ABID97_RS18765 0.50 +0.2
3,865,175 - ABID97_RS18765 0.50 -0.8
3,865,175 - ABID97_RS18765 0.50 +0.2

Or see this region's nucleotide sequence