Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18500

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18490 and ABID97_RS18495 overlap by 4 nucleotidesABID97_RS18495 and ABID97_RS18500 overlap by 4 nucleotidesABID97_RS18500 and ABID97_RS18505 are separated by 36 nucleotidesABID97_RS18505 and ABID97_RS18510 are separated by 6 nucleotides ABID97_RS18490: ABID97_RS18490 - enoyl-CoA hydratase-related protein, at 3,811,467 to 3,812,282 _RS18490 ABID97_RS18495: ABID97_RS18495 - DUF2889 domain-containing protein, at 3,812,279 to 3,812,836 _RS18495 ABID97_RS18500: ABID97_RS18500 - CaiB/BaiF CoA-transferase family protein, at 3,812,833 to 3,814,005 _RS18500 ABID97_RS18505: ABID97_RS18505 - transglutaminase family protein, at 3,814,042 to 3,814,719 _RS18505 ABID97_RS18510: ABID97_RS18510 - acyl-CoA dehydrogenase family protein, at 3,814,726 to 3,815,889 _RS18510 Position (kb) 3812 3813 3814 3815Strain fitness (log2 ratio) -2 -1 0 1at 3812.033 kb on - strand, within ABID97_RS18490at 3812.556 kb on + strand, within ABID97_RS18495at 3812.857 kb on + strandat 3812.858 kb on - strandat 3813.281 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.594 kb on - strand, within ABID97_RS18500at 3813.594 kb on - strand, within ABID97_RS18500at 3813.689 kb on - strand, within ABID97_RS18500at 3814.082 kb on + strandat 3814.152 kb on - strand, within ABID97_RS18505at 3814.863 kb on + strand, within ABID97_RS18510

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,812,033 - ABID97_RS18490 0.69 +0.1
3,812,556 + ABID97_RS18495 0.50 -2.2
3,812,857 + -0.7
3,812,858 - +0.8
3,813,281 + ABID97_RS18500 0.38 +1.0
3,813,302 + ABID97_RS18500 0.40 -0.7
3,813,302 + ABID97_RS18500 0.40 +0.1
3,813,302 + ABID97_RS18500 0.40 -0.4
3,813,594 - ABID97_RS18500 0.65 +0.1
3,813,594 - ABID97_RS18500 0.65 -0.5
3,813,689 - ABID97_RS18500 0.73 +0.3
3,814,082 + +1.1
3,814,152 - ABID97_RS18505 0.16 +0.7
3,814,863 + ABID97_RS18510 0.12 +0.9

Or see this region's nucleotide sequence