Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18080

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18075 and ABID97_RS18080 are separated by 77 nucleotidesABID97_RS18080 and ABID97_RS18085 are separated by 125 nucleotides ABID97_RS18075: ABID97_RS18075 - beta-glucosidase BglX, at 3,733,270 to 3,735,543 _RS18075 ABID97_RS18080: ABID97_RS18080 - alpha/beta hydrolase, at 3,735,621 to 3,735,971 _RS18080 ABID97_RS18085: ABID97_RS18085 - LysR family transcriptional regulator, at 3,736,097 to 3,737,068 _RS18085 Position (kb) 3735 3736Strain fitness (log2 ratio) -1 0 1at 3735.061 kb on + strand, within ABID97_RS18075at 3735.062 kb on - strand, within ABID97_RS18075at 3735.062 kb on - strand, within ABID97_RS18075at 3735.062 kb on - strand, within ABID97_RS18075at 3735.062 kb on - strand, within ABID97_RS18075at 3735.065 kb on - strand, within ABID97_RS18075at 3735.197 kb on - strand, within ABID97_RS18075at 3735.308 kb on - strand, within ABID97_RS18075at 3735.308 kb on - strand, within ABID97_RS18075at 3735.665 kb on - strand, within ABID97_RS18080at 3735.982 kb on + strandat 3735.983 kb on - strandat 3736.142 kb on + strandat 3736.142 kb on + strandat 3736.142 kb on + strandat 3736.281 kb on + strand, within ABID97_RS18085at 3736.282 kb on - strand, within ABID97_RS18085at 3736.501 kb on - strand, within ABID97_RS18085

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,735,061 + ABID97_RS18075 0.79 -0.2
3,735,062 - ABID97_RS18075 0.79 +0.3
3,735,062 - ABID97_RS18075 0.79 -0.1
3,735,062 - ABID97_RS18075 0.79 +1.1
3,735,062 - ABID97_RS18075 0.79 +0.0
3,735,065 - ABID97_RS18075 0.79 +0.4
3,735,197 - ABID97_RS18075 0.85 +0.1
3,735,308 - ABID97_RS18075 0.90 +0.2
3,735,308 - ABID97_RS18075 0.90 -0.8
3,735,665 - ABID97_RS18080 0.13 -1.5
3,735,982 + +0.3
3,735,983 - -0.2
3,736,142 + -0.1
3,736,142 + -0.2
3,736,142 + -0.5
3,736,281 + ABID97_RS18085 0.19 -0.3
3,736,282 - ABID97_RS18085 0.19 +0.6
3,736,501 - ABID97_RS18085 0.42 +0.3

Or see this region's nucleotide sequence