Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17840

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17835 and ABID97_RS17840 are separated by 16 nucleotidesABID97_RS17840 and ABID97_RS17845 are separated by 17 nucleotides ABID97_RS17835: ABID97_RS17835 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 3,682,680 to 3,683,660 _RS17835 ABID97_RS17840: ABID97_RS17840 - DNA-3-methyladenine glycosylase 2 family protein, at 3,683,677 to 3,684,327 _RS17840 ABID97_RS17845: ABID97_RS17845 - cysteine--tRNA ligase, at 3,684,345 to 3,685,721 _RS17845 Position (kb) 3683 3684 3685Strain fitness (log2 ratio) -1 0 1 2at 3682.681 kb on + strandat 3682.681 kb on + strandat 3683.716 kb on - strandat 3683.716 kb on - strandat 3683.716 kb on - strandat 3683.717 kb on + strandat 3683.717 kb on + strandat 3683.717 kb on + strandat 3683.718 kb on - strandat 3683.718 kb on - strandat 3683.718 kb on - strandat 3684.011 kb on + strand, within ABID97_RS17840at 3684.012 kb on - strand, within ABID97_RS17840at 3684.293 kb on + strandat 3684.293 kb on + strandat 3684.293 kb on + strandat 3684.293 kb on + strandat 3684.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,682,681 + -0.9
3,682,681 + -0.3
3,683,716 - +1.0
3,683,716 - +0.3
3,683,716 - +1.4
3,683,717 + -0.6
3,683,717 + -0.4
3,683,717 + +0.3
3,683,718 - +1.0
3,683,718 - +1.0
3,683,718 - +0.6
3,684,011 + ABID97_RS17840 0.51 +1.2
3,684,012 - ABID97_RS17840 0.51 +0.0
3,684,293 + +0.2
3,684,293 + +2.3
3,684,293 + +0.6
3,684,293 + -0.3
3,684,294 - -0.0

Or see this region's nucleotide sequence