Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17680 and ABID97_RS17685 are separated by 154 nucleotides ABID97_RS17685 and ABID97_RS17690 overlap by 4 nucleotides ABID97_RS17690 and ABID97_RS17695 are separated by 173 nucleotides
ABID97_RS17680: ABID97_RS17680 - branched-chain amino acid ABC transporter permease, at 3,651,799 to 3,652,782
_RS17680
ABID97_RS17685: ABID97_RS17685 - ABC transporter ATP-binding protein, at 3,652,937 to 3,653,656
_RS17685
ABID97_RS17690: ABID97_RS17690 - ABC transporter ATP-binding protein, at 3,653,653 to 3,654,417
_RS17690
ABID97_RS17695: ABID97_RS17695 - substrate-binding domain-containing protein, at 3,654,591 to 3,655,778
_RS17695
Position (kb) 3653
3654
3655 Strain fitness (log2 ratio) -1
0
1 at 3652.934 kb on - strand at 3653.412 kb on + strand, within ABID97_RS17685 at 3653.413 kb on - strand, within ABID97_RS17685 at 3653.610 kb on + strand at 3653.610 kb on + strand at 3653.639 kb on + strand at 3653.640 kb on - strand at 3653.640 kb on - strand at 3653.681 kb on + strand at 3654.290 kb on + strand, within ABID97_RS17690 at 3654.290 kb on + strand, within ABID97_RS17690 at 3654.697 kb on + strand at 3654.698 kb on - strand at 3655.187 kb on - strand, within ABID97_RS17695 at 3655.187 kb on - strand, within ABID97_RS17695 at 3655.357 kb on + strand, within ABID97_RS17695 at 3655.358 kb on + strand, within ABID97_RS17695 at 3655.358 kb on - strand, within ABID97_RS17695 at 3655.358 kb on - strand, within ABID97_RS17695 at 3655.358 kb on - strand, within ABID97_RS17695 at 3655.358 kb on - strand, within ABID97_RS17695
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 3,652,934 - -0.1 3,653,412 + ABID97_RS17685 0.66 +0.0 3,653,413 - ABID97_RS17685 0.66 -0.7 3,653,610 + +0.4 3,653,610 + -0.3 3,653,639 + +1.0 3,653,640 - +0.4 3,653,640 - +1.0 3,653,681 + +0.5 3,654,290 + ABID97_RS17690 0.83 +0.4 3,654,290 + ABID97_RS17690 0.83 -0.5 3,654,697 + +0.4 3,654,698 - +1.4 3,655,187 - ABID97_RS17695 0.50 +1.2 3,655,187 - ABID97_RS17695 0.50 +0.5 3,655,357 + ABID97_RS17695 0.64 +0.5 3,655,358 + ABID97_RS17695 0.65 -0.6 3,655,358 - ABID97_RS17695 0.65 +0.4 3,655,358 - ABID97_RS17695 0.65 +0.0 3,655,358 - ABID97_RS17695 0.65 -1.0 3,655,358 - ABID97_RS17695 0.65 -0.5
Or see this region's nucleotide sequence