Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17045 and ABID97_RS17050 are separated by 179 nucleotides ABID97_RS17050 and ABID97_RS17055 are separated by 90 nucleotides ABID97_RS17055 and ABID97_RS17060 are separated by 41 nucleotides
ABID97_RS17045: ABID97_RS17045 - ATP-dependent zinc metalloprotease FtsH, at 3,522,251 to 3,524,167
_RS17045
ABID97_RS17050: ABID97_RS17050 - RlmE family RNA methyltransferase, at 3,524,347 to 3,525,015
_RS17050
ABID97_RS17055: ABID97_RS17055 - YhbY family RNA-binding protein, at 3,525,106 to 3,525,585
_RS17055
ABID97_RS17060: ABID97_RS17060 - glycosyltransferase, at 3,525,627 to 3,526,346
_RS17060
Position (kb)
3524
3525
3526 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3524.216 kb on - strand at 3524.288 kb on - strand at 3524.310 kb on - strand at 3524.345 kb on + strand at 3524.345 kb on + strand at 3524.811 kb on - strand, within ABID97_RS17050 at 3524.811 kb on - strand, within ABID97_RS17050 at 3524.948 kb on + strand, within ABID97_RS17050 at 3524.948 kb on + strand, within ABID97_RS17050 at 3524.949 kb on - strand at 3524.949 kb on - strand at 3525.096 kb on + strand at 3525.445 kb on + strand, within ABID97_RS17055 at 3525.445 kb on + strand, within ABID97_RS17055
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 3,524,216 - -0.7 3,524,288 - -0.8 3,524,310 - -1.9 3,524,345 + +3.2 3,524,345 + +0.2 3,524,811 - ABID97_RS17050 0.69 +0.8 3,524,811 - ABID97_RS17050 0.69 -1.0 3,524,948 + ABID97_RS17050 0.90 +0.9 3,524,948 + ABID97_RS17050 0.90 -0.0 3,524,949 - +1.4 3,524,949 - -0.4 3,525,096 + -0.8 3,525,445 + ABID97_RS17055 0.71 -0.7 3,525,445 + ABID97_RS17055 0.71 +0.1
Or see this region's nucleotide sequence