Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17050

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17045 and ABID97_RS17050 are separated by 179 nucleotidesABID97_RS17050 and ABID97_RS17055 are separated by 90 nucleotidesABID97_RS17055 and ABID97_RS17060 are separated by 41 nucleotides ABID97_RS17045: ABID97_RS17045 - ATP-dependent zinc metalloprotease FtsH, at 3,522,251 to 3,524,167 _RS17045 ABID97_RS17050: ABID97_RS17050 - RlmE family RNA methyltransferase, at 3,524,347 to 3,525,015 _RS17050 ABID97_RS17055: ABID97_RS17055 - YhbY family RNA-binding protein, at 3,525,106 to 3,525,585 _RS17055 ABID97_RS17060: ABID97_RS17060 - glycosyltransferase, at 3,525,627 to 3,526,346 _RS17060 Position (kb) 3524 3525 3526Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3524.216 kb on - strandat 3524.288 kb on - strandat 3524.310 kb on - strandat 3524.345 kb on + strandat 3524.345 kb on + strandat 3524.811 kb on - strand, within ABID97_RS17050at 3524.811 kb on - strand, within ABID97_RS17050at 3524.948 kb on + strand, within ABID97_RS17050at 3524.948 kb on + strand, within ABID97_RS17050at 3524.949 kb on - strandat 3524.949 kb on - strandat 3525.096 kb on + strandat 3525.445 kb on + strand, within ABID97_RS17055at 3525.445 kb on + strand, within ABID97_RS17055

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,524,216 - -0.7
3,524,288 - -0.8
3,524,310 - -1.9
3,524,345 + +3.2
3,524,345 + +0.2
3,524,811 - ABID97_RS17050 0.69 +0.8
3,524,811 - ABID97_RS17050 0.69 -1.0
3,524,948 + ABID97_RS17050 0.90 +0.9
3,524,948 + ABID97_RS17050 0.90 -0.0
3,524,949 - +1.4
3,524,949 - -0.4
3,525,096 + -0.8
3,525,445 + ABID97_RS17055 0.71 -0.7
3,525,445 + ABID97_RS17055 0.71 +0.1

Or see this region's nucleotide sequence