Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16490

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16485 and ABID97_RS16490 are separated by 24 nucleotidesABID97_RS16490 and ABID97_RS16495 are separated by 16 nucleotidesABID97_RS16495 and ABID97_RS16500 are separated by 189 nucleotides ABID97_RS16485: ABID97_RS16485 - translation initiation factor IF-2, at 3,407,562 to 3,410,525 _RS16485 ABID97_RS16490: ABID97_RS16490 - transcription termination factor NusA, at 3,410,550 to 3,412,034 _RS16490 ABID97_RS16495: ABID97_RS16495 - ribosome maturation factor RimP, at 3,412,051 to 3,412,698 _RS16495 ABID97_RS16500: ABID97_RS16500 - YbfB/YjiJ family MFS transporter, at 3,412,888 to 3,414,087 _RS16500 Position (kb) 3410 3411 3412 3413Strain fitness (log2 ratio) -1 0 1at 3412.470 kb on - strand, within ABID97_RS16495at 3412.653 kb on - strandat 3412.728 kb on - strandat 3412.728 kb on - strandat 3412.795 kb on - strandat 3412.795 kb on - strandat 3412.900 kb on - strandat 3412.900 kb on - strandat 3412.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,412,470 - ABID97_RS16495 0.65 -0.1
3,412,653 - +1.4
3,412,728 - -1.1
3,412,728 - -0.8
3,412,795 - -1.2
3,412,795 - -0.7
3,412,900 - -0.2
3,412,900 - +0.1
3,412,900 - +0.5

Or see this region's nucleotide sequence