Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16020

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16010 and ABID97_RS16015 are separated by 166 nucleotidesABID97_RS16015 and ABID97_RS16020 are separated by 256 nucleotidesABID97_RS16020 and ABID97_RS16025 are separated by 17 nucleotidesABID97_RS16025 and ABID97_RS16030 are separated by 81 nucleotides ABID97_RS16010: ABID97_RS16010 - ISNCY family transposase, at 3,315,667 to 3,317,082 _RS16010 ABID97_RS16015: ABID97_RS16015 - secondary thiamine-phosphate synthase enzyme YjbQ, at 3,317,249 to 3,317,671 _RS16015 ABID97_RS16020: ABID97_RS16020 - nitrite reductase large subunit NirB, at 3,317,928 to 3,320,396 _RS16020 ABID97_RS16025: ABID97_RS16025 - nitrite reductase small subunit NirD, at 3,320,414 to 3,320,824 _RS16025 ABID97_RS16030: ABID97_RS16030 - uroporphyrinogen-III C-methyltransferase, at 3,320,906 to 3,321,676 _RS16030 Position (kb) 3317 3318 3319 3320 3321Strain fitness (log2 ratio) -1 0 1 2at 3317.147 kb on + strandat 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.606 kb on + strand, within ABID97_RS16015at 3317.607 kb on - strand, within ABID97_RS16015at 3317.607 kb on - strand, within ABID97_RS16015at 3317.607 kb on - strand, within ABID97_RS16015at 3317.669 kb on + strandat 3317.669 kb on + strandat 3317.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,317,147 + -1.3
3,317,606 + ABID97_RS16015 0.84 +0.6
3,317,606 + ABID97_RS16015 0.84 +2.0
3,317,606 + ABID97_RS16015 0.84 -0.1
3,317,606 + ABID97_RS16015 0.84 -0.2
3,317,606 + ABID97_RS16015 0.84 +1.1
3,317,606 + ABID97_RS16015 0.84 -0.4
3,317,607 - ABID97_RS16015 0.85 +0.2
3,317,607 - ABID97_RS16015 0.85 -0.0
3,317,607 - ABID97_RS16015 0.85 -1.3
3,317,669 + +0.3
3,317,669 + -0.8
3,317,670 - +0.9

Or see this region's nucleotide sequence