Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15610

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15600 and ABID97_RS15605 overlap by 4 nucleotidesABID97_RS15605 and ABID97_RS15610 are separated by 59 nucleotidesABID97_RS15610 and ABID97_RS15615 are separated by 113 nucleotides ABID97_RS15600: ABID97_RS15600 - type II toxin-antitoxin system HipA family toxin, at 3,223,474 to 3,224,772 _RS15600 ABID97_RS15605: ABID97_RS15605 - helix-turn-helix domain-containing protein, at 3,224,769 to 3,225,083 _RS15605 ABID97_RS15610: ABID97_RS15610 - hypothetical protein, at 3,225,143 to 3,225,904 _RS15610 ABID97_RS15615: ABID97_RS15615 - chromosome segregation protein SMC, at 3,226,018 to 3,229,533 _RS15615 Position (kb) 3225 3226Strain fitness (log2 ratio) -1 0 1at 3224.176 kb on + strand, within ABID97_RS15600at 3224.176 kb on + strand, within ABID97_RS15600at 3224.177 kb on - strand, within ABID97_RS15600at 3224.712 kb on - strandat 3224.750 kb on - strandat 3224.750 kb on - strandat 3225.144 kb on + strandat 3225.144 kb on + strandat 3225.145 kb on - strandat 3225.145 kb on - strandat 3225.152 kb on + strandat 3225.682 kb on - strand, within ABID97_RS15610

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,224,176 + ABID97_RS15600 0.54 -0.9
3,224,176 + ABID97_RS15600 0.54 -0.1
3,224,177 - ABID97_RS15600 0.54 +0.1
3,224,712 - -0.6
3,224,750 - +0.1
3,224,750 - -1.2
3,225,144 + -1.1
3,225,144 + +0.1
3,225,145 - +0.4
3,225,145 - -0.4
3,225,152 + +0.2
3,225,682 - ABID97_RS15610 0.71 -1.1

Or see this region's nucleotide sequence