Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15230

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS15215 and ABID97_RS15220 overlap by 8 nucleotidesABID97_RS15220 and ABID97_RS15225 overlap by 4 nucleotidesABID97_RS15225 and ABID97_RS15230 are separated by 4 nucleotidesABID97_RS15230 and ABID97_RS15235 overlap by 1 nucleotidesABID97_RS15235 and ABID97_RS15240 are separated by 111 nucleotides ABID97_RS15215: ABID97_RS15215 - lysozyme, at 3,150,741 to 3,151,316 _RS15215 ABID97_RS15220: ABID97_RS15220 - hypothetical protein, at 3,151,309 to 3,151,608 _RS15220 ABID97_RS15225: ABID97_RS15225 - hypothetical protein, at 3,151,605 to 3,152,018 _RS15225 ABID97_RS15230: ABID97_RS15230 - tail protein X, at 3,152,023 to 3,152,226 _RS15230 ABID97_RS15235: ABID97_RS15235 - head completion/stabilization protein, at 3,152,226 to 3,152,696 _RS15235 ABID97_RS15240: ABID97_RS15240 - phage terminase small subunit, at 3,152,808 to 3,153,515 _RS15240 Position (kb) 3152 3153Strain fitness (log2 ratio) -1 0 1at 3152.055 kb on + strand, within ABID97_RS15230at 3152.721 kb on + strandat 3152.950 kb on + strand, within ABID97_RS15240at 3153.194 kb on - strand, within ABID97_RS15240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
3,152,055 + ABID97_RS15230 0.16 -0.6
3,152,721 + +0.1
3,152,950 + ABID97_RS15240 0.20 -1.0
3,153,194 - ABID97_RS15240 0.55 -0.5

Or see this region's nucleotide sequence