Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14670 and ABID97_RS14675 are separated by 24 nucleotides ABID97_RS14675 and ABID97_RS14680 are separated by 109 nucleotides ABID97_RS14680 and ABID97_RS14690 are separated by 295 nucleotides
ABID97_RS14670: ABID97_RS14670 - TIGR03862 family flavoprotein, at 3,053,226 to 3,054,464
_RS14670
ABID97_RS14675: ABID97_RS14675 - winged helix-turn-helix transcriptional regulator, at 3,054,489 to 3,055,178
_RS14675
ABID97_RS14680: ABID97_RS14680 - methyltransferase domain-containing protein, at 3,055,288 to 3,056,160
_RS14680
ABID97_RS14690: ABID97_RS14690 - DNA polymerase III subunit gamma/tau, at 3,056,456 to 3,058,309
_RS14690
Position (kb)
3055
3056
3057 Strain fitness (log2 ratio)
-1
0
1
2 at 3054.648 kb on + strand, within ABID97_RS14675 at 3055.154 kb on + strand at 3055.155 kb on - strand at 3055.169 kb on - strand at 3055.189 kb on + strand at 3055.299 kb on + strand at 3055.299 kb on + strand at 3055.300 kb on - strand at 3055.699 kb on + strand, within ABID97_RS14680 at 3055.777 kb on + strand, within ABID97_RS14680 at 3055.943 kb on + strand, within ABID97_RS14680 at 3056.037 kb on - strand, within ABID97_RS14680 at 3056.233 kb on - strand at 3056.410 kb on - strand at 3056.443 kb on + strand at 3056.443 kb on + strand at 3056.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 3,054,648 + ABID97_RS14675 0.23 +0.2 3,055,154 + -0.9 3,055,155 - -0.6 3,055,169 - +1.9 3,055,189 + +0.5 3,055,299 + -0.2 3,055,299 + -1.7 3,055,300 - +0.1 3,055,699 + ABID97_RS14680 0.47 +0.1 3,055,777 + ABID97_RS14680 0.56 +1.3 3,055,943 + ABID97_RS14680 0.75 +0.5 3,056,037 - ABID97_RS14680 0.86 +0.1 3,056,233 - -0.8 3,056,410 - +1.4 3,056,443 + -0.5 3,056,443 + -1.1 3,056,444 - +0.3
Or see this region's nucleotide sequence