Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14680

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14670 and ABID97_RS14675 are separated by 24 nucleotidesABID97_RS14675 and ABID97_RS14680 are separated by 109 nucleotidesABID97_RS14680 and ABID97_RS14690 are separated by 295 nucleotides ABID97_RS14670: ABID97_RS14670 - TIGR03862 family flavoprotein, at 3,053,226 to 3,054,464 _RS14670 ABID97_RS14675: ABID97_RS14675 - winged helix-turn-helix transcriptional regulator, at 3,054,489 to 3,055,178 _RS14675 ABID97_RS14680: ABID97_RS14680 - methyltransferase domain-containing protein, at 3,055,288 to 3,056,160 _RS14680 ABID97_RS14690: ABID97_RS14690 - DNA polymerase III subunit gamma/tau, at 3,056,456 to 3,058,309 _RS14690 Position (kb) 3055 3056 3057Strain fitness (log2 ratio) -1 0 1 2at 3054.648 kb on + strand, within ABID97_RS14675at 3055.154 kb on + strandat 3055.155 kb on - strandat 3055.169 kb on - strandat 3055.189 kb on + strandat 3055.299 kb on + strandat 3055.299 kb on + strandat 3055.300 kb on - strandat 3055.699 kb on + strand, within ABID97_RS14680at 3055.777 kb on + strand, within ABID97_RS14680at 3055.943 kb on + strand, within ABID97_RS14680at 3056.037 kb on - strand, within ABID97_RS14680at 3056.233 kb on - strandat 3056.410 kb on - strandat 3056.443 kb on + strandat 3056.443 kb on + strandat 3056.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,054,648 + ABID97_RS14675 0.23 +0.2
3,055,154 + -0.9
3,055,155 - -0.6
3,055,169 - +1.9
3,055,189 + +0.5
3,055,299 + -0.2
3,055,299 + -1.7
3,055,300 - +0.1
3,055,699 + ABID97_RS14680 0.47 +0.1
3,055,777 + ABID97_RS14680 0.56 +1.3
3,055,943 + ABID97_RS14680 0.75 +0.5
3,056,037 - ABID97_RS14680 0.86 +0.1
3,056,233 - -0.8
3,056,410 - +1.4
3,056,443 + -0.5
3,056,443 + -1.1
3,056,444 - +0.3

Or see this region's nucleotide sequence