Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13815

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13810 and ABID97_RS13815 are separated by 50 nucleotidesABID97_RS13815 and ABID97_RS13820 are separated by 4 nucleotidesABID97_RS13820 and ABID97_RS13825 overlap by 1 nucleotidesABID97_RS13825 and ABID97_RS13830 are separated by 10 nucleotides ABID97_RS13810: ABID97_RS13810 - phage portal protein, at 2,865,830 to 2,867,377 _RS13810 ABID97_RS13815: ABID97_RS13815 - phage major capsid protein, at 2,867,428 to 2,869,293 _RS13815 ABID97_RS13820: ABID97_RS13820 - head-tail joining protein, at 2,869,298 to 2,869,582 _RS13820 ABID97_RS13825: ABID97_RS13825 - hypothetical protein, at 2,869,582 to 2,869,995 _RS13825 ABID97_RS13830: ABID97_RS13830 - hypothetical protein, at 2,870,006 to 2,870,791 _RS13830 Position (kb) 2867 2868 2869 2870Strain fitness (log2 ratio) -2 -1 0 1at 2866.859 kb on + strand, within ABID97_RS13810at 2867.809 kb on + strand, within ABID97_RS13815at 2868.159 kb on + strand, within ABID97_RS13815at 2868.589 kb on + strand, within ABID97_RS13815at 2868.941 kb on - strand, within ABID97_RS13815at 2870.258 kb on + strand, within ABID97_RS13830at 2870.259 kb on - strand, within ABID97_RS13830at 2870.259 kb on - strand, within ABID97_RS13830

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,866,859 + ABID97_RS13810 0.66 +0.2
2,867,809 + ABID97_RS13815 0.20 -2.7
2,868,159 + ABID97_RS13815 0.39 -2.1
2,868,589 + ABID97_RS13815 0.62 -0.3
2,868,941 - ABID97_RS13815 0.81 -0.1
2,870,258 + ABID97_RS13830 0.32 +0.5
2,870,259 - ABID97_RS13830 0.32 -0.9
2,870,259 - ABID97_RS13830 0.32 -0.7

Or see this region's nucleotide sequence