Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13420

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13415 and ABID97_RS13420 overlap by 4 nucleotidesABID97_RS13420 and ABID97_RS13425 are separated by 80 nucleotidesABID97_RS13425 and ABID97_RS13430 are separated by 17 nucleotides ABID97_RS13415: ABID97_RS13415 - PDR/VanB family oxidoreductase, at 2,793,634 to 2,794,584 _RS13415 ABID97_RS13420: ABID97_RS13420 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,794,581 to 2,795,663 _RS13420 ABID97_RS13425: ABID97_RS13425 - PaaI family thioesterase, at 2,795,744 to 2,796,211 _RS13425 ABID97_RS13430: ABID97_RS13430 - 3-keto-5-aminohexanoate cleavage protein, at 2,796,229 to 2,797,113 _RS13430 Position (kb) 2794 2795 2796Strain fitness (log2 ratio) -1 0 1at 2794.022 kb on + strand, within ABID97_RS13415at 2794.140 kb on - strand, within ABID97_RS13415at 2795.239 kb on + strand, within ABID97_RS13420

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,794,022 + ABID97_RS13415 0.41 -0.3
2,794,140 - ABID97_RS13415 0.53 -0.1
2,795,239 + ABID97_RS13420 0.61 -1.2

Or see this region's nucleotide sequence