Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13280

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13275 and ABID97_RS13280 are separated by 13 nucleotidesABID97_RS13280 and ABID97_RS13285 are separated by 125 nucleotides ABID97_RS13275: ABID97_RS13275 - MDR family oxidoreductase, at 2,765,068 to 2,766,054 _RS13275 ABID97_RS13280: ABID97_RS13280 - thiamine pyrophosphate-dependent enzyme, at 2,766,068 to 2,767,708 _RS13280 ABID97_RS13285: ABID97_RS13285 - aldolase, at 2,767,834 to 2,768,631 _RS13285 Position (kb) 2766 2767 2768Strain fitness (log2 ratio) -1 0 1at 2765.068 kb on - strandat 2765.068 kb on - strandat 2765.191 kb on + strand, within ABID97_RS13275at 2765.191 kb on + strand, within ABID97_RS13275at 2765.191 kb on + strand, within ABID97_RS13275at 2765.422 kb on - strand, within ABID97_RS13275at 2765.584 kb on + strand, within ABID97_RS13275at 2765.626 kb on + strand, within ABID97_RS13275at 2765.753 kb on + strand, within ABID97_RS13275at 2765.754 kb on - strand, within ABID97_RS13275at 2765.954 kb on + strand, within ABID97_RS13275at 2766.074 kb on + strandat 2766.074 kb on + strandat 2766.074 kb on + strandat 2766.785 kb on + strand, within ABID97_RS13280at 2767.469 kb on + strand, within ABID97_RS13280at 2767.750 kb on + strandat 2767.757 kb on + strandat 2767.758 kb on - strandat 2768.023 kb on + strand, within ABID97_RS13285at 2768.387 kb on - strand, within ABID97_RS13285at 2768.423 kb on - strand, within ABID97_RS13285at 2768.683 kb on + strandat 2768.683 kb on + strandat 2768.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,765,068 - +0.0
2,765,068 - -0.5
2,765,191 + ABID97_RS13275 0.12 -1.7
2,765,191 + ABID97_RS13275 0.12 -0.7
2,765,191 + ABID97_RS13275 0.12 +1.1
2,765,422 - ABID97_RS13275 0.36 +1.6
2,765,584 + ABID97_RS13275 0.52 +0.6
2,765,626 + ABID97_RS13275 0.57 -0.0
2,765,753 + ABID97_RS13275 0.69 -0.7
2,765,754 - ABID97_RS13275 0.70 +0.8
2,765,954 + ABID97_RS13275 0.90 +0.2
2,766,074 + +0.4
2,766,074 + +0.9
2,766,074 + +0.2
2,766,785 + ABID97_RS13280 0.44 -0.3
2,767,469 + ABID97_RS13280 0.85 -0.5
2,767,750 + +0.1
2,767,757 + +0.6
2,767,758 - -0.1
2,768,023 + ABID97_RS13285 0.24 -0.4
2,768,387 - ABID97_RS13285 0.69 +0.1
2,768,423 - ABID97_RS13285 0.74 -0.5
2,768,683 + -0.0
2,768,683 + +0.6
2,768,684 - -0.1

Or see this region's nucleotide sequence