Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11915

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11910 and ABID97_RS11915 are separated by 19 nucleotidesABID97_RS11915 and ABID97_RS11920 overlap by 14 nucleotidesABID97_RS11920 and ABID97_RS11925 are separated by 7 nucleotides ABID97_RS11910: ABID97_RS11910 - glycosyltransferase, at 2,460,307 to 2,461,401 _RS11910 ABID97_RS11915: ABID97_RS11915 - TIGR04290 family methyltransferase, at 2,461,421 to 2,462,239 _RS11915 ABID97_RS11920: ABID97_RS11920 - DUF1003 domain-containing protein, at 2,462,226 to 2,462,774 _RS11920 ABID97_RS11925: ABID97_RS11925 - DUF4142 domain-containing protein, at 2,462,782 to 2,463,363 _RS11925 Position (kb) 2461 2462 2463Strain fitness (log2 ratio) -1 0 1 2at 2460.458 kb on - strand, within ABID97_RS11910at 2460.649 kb on + strand, within ABID97_RS11910at 2460.649 kb on + strand, within ABID97_RS11910at 2460.650 kb on - strand, within ABID97_RS11910at 2460.743 kb on - strand, within ABID97_RS11910at 2460.817 kb on + strand, within ABID97_RS11910at 2462.144 kb on + strand, within ABID97_RS11915at 2462.189 kb on + strandat 2462.336 kb on - strand, within ABID97_RS11920at 2462.403 kb on + strand, within ABID97_RS11920at 2462.951 kb on + strand, within ABID97_RS11925

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,460,458 - ABID97_RS11910 0.14 -0.1
2,460,649 + ABID97_RS11910 0.31 -0.3
2,460,649 + ABID97_RS11910 0.31 -0.8
2,460,650 - ABID97_RS11910 0.31 -0.4
2,460,743 - ABID97_RS11910 0.40 +0.7
2,460,817 + ABID97_RS11910 0.47 -0.0
2,462,144 + ABID97_RS11915 0.88 +0.3
2,462,189 + +0.3
2,462,336 - ABID97_RS11920 0.20 -1.2
2,462,403 + ABID97_RS11920 0.32 +2.2
2,462,951 + ABID97_RS11925 0.29 -0.4

Or see this region's nucleotide sequence