Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11765 and ABID97_RS11770 overlap by 4 nucleotides ABID97_RS11770 and ABID97_RS11775 are separated by 8 nucleotides ABID97_RS11775 and ABID97_RS11780 are separated by 34 nucleotides
ABID97_RS11765: ABID97_RS11765 - four-carbon acid sugar kinase family protein, at 2,431,102 to 2,432,436
_RS11765
ABID97_RS11770: ABID97_RS11770 - ribulose-bisphosphate carboxylase large subunit family protein, at 2,432,433 to 2,433,704
_RS11770
ABID97_RS11775: ABID97_RS11775 - VOC family protein, at 2,433,713 to 2,434,252
_RS11775
ABID97_RS11780: ABID97_RS11780 - TRAP transporter large permease subunit, at 2,434,287 to 2,436,182
_RS11780
Position (kb)
2432
2433
2434 Strain fitness (log2 ratio)
-1
0
1 at 2431.645 kb on - strand, within ABID97_RS11765 at 2432.178 kb on - strand, within ABID97_RS11765 at 2432.409 kb on - strand at 2432.411 kb on + strand at 2433.002 kb on + strand, within ABID97_RS11770 at 2433.374 kb on - strand, within ABID97_RS11770 at 2433.948 kb on + strand, within ABID97_RS11775 at 2434.182 kb on + strand, within ABID97_RS11775 at 2434.215 kb on + strand at 2434.489 kb on + strand, within ABID97_RS11780 at 2434.490 kb on - strand, within ABID97_RS11780
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 2,431,645 - ABID97_RS11765 0.41 -0.2 2,432,178 - ABID97_RS11765 0.81 +0.1 2,432,409 - -0.1 2,432,411 + +0.0 2,433,002 + ABID97_RS11770 0.45 +1.0 2,433,374 - ABID97_RS11770 0.74 +0.9 2,433,948 + ABID97_RS11775 0.44 -0.5 2,434,182 + ABID97_RS11775 0.87 +0.2 2,434,215 + +0.1 2,434,489 + ABID97_RS11780 0.11 -0.1 2,434,490 - ABID97_RS11780 0.11 -1.0
Or see this region's nucleotide sequence