Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11770

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11765 and ABID97_RS11770 overlap by 4 nucleotidesABID97_RS11770 and ABID97_RS11775 are separated by 8 nucleotidesABID97_RS11775 and ABID97_RS11780 are separated by 34 nucleotides ABID97_RS11765: ABID97_RS11765 - four-carbon acid sugar kinase family protein, at 2,431,102 to 2,432,436 _RS11765 ABID97_RS11770: ABID97_RS11770 - ribulose-bisphosphate carboxylase large subunit family protein, at 2,432,433 to 2,433,704 _RS11770 ABID97_RS11775: ABID97_RS11775 - VOC family protein, at 2,433,713 to 2,434,252 _RS11775 ABID97_RS11780: ABID97_RS11780 - TRAP transporter large permease subunit, at 2,434,287 to 2,436,182 _RS11780 Position (kb) 2432 2433 2434Strain fitness (log2 ratio) -1 0 1at 2431.645 kb on - strand, within ABID97_RS11765at 2432.178 kb on - strand, within ABID97_RS11765at 2432.409 kb on - strandat 2432.411 kb on + strandat 2433.002 kb on + strand, within ABID97_RS11770at 2433.374 kb on - strand, within ABID97_RS11770at 2433.948 kb on + strand, within ABID97_RS11775at 2434.182 kb on + strand, within ABID97_RS11775at 2434.215 kb on + strandat 2434.489 kb on + strand, within ABID97_RS11780at 2434.490 kb on - strand, within ABID97_RS11780

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,431,645 - ABID97_RS11765 0.41 -0.2
2,432,178 - ABID97_RS11765 0.81 +0.1
2,432,409 - -0.1
2,432,411 + +0.0
2,433,002 + ABID97_RS11770 0.45 +1.0
2,433,374 - ABID97_RS11770 0.74 +0.9
2,433,948 + ABID97_RS11775 0.44 -0.5
2,434,182 + ABID97_RS11775 0.87 +0.2
2,434,215 + +0.1
2,434,489 + ABID97_RS11780 0.11 -0.1
2,434,490 - ABID97_RS11780 0.11 -1.0

Or see this region's nucleotide sequence