Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11450 and ABID97_RS11455 overlap by 16 nucleotides ABID97_RS11455 and ABID97_RS11460 are separated by 530 nucleotides ABID97_RS11460 and ABID97_RS11465 overlap by 4 nucleotides ABID97_RS11465 and ABID97_RS11470 are separated by 55 nucleotides
ABID97_RS11450: ABID97_RS11450 - TetR/AcrR family transcriptional regulator, at 2,363,526 to 2,364,143
_RS11450
ABID97_RS11455: ABID97_RS11455 - hypothetical protein, at 2,364,128 to 2,364,316
_RS11455
ABID97_RS11460: ABID97_RS11460 - 2-hydroxychromene-2-carboxylate isomerase, at 2,364,847 to 2,365,431
_RS11460
ABID97_RS11465: ABID97_RS11465 - SDR family NAD(P)-dependent oxidoreductase, at 2,365,428 to 2,366,126
_RS11465
ABID97_RS11470: ABID97_RS11470 - zinc-binding dehydrogenase, at 2,366,182 to 2,367,309
_RS11470
Position (kb)
2364
2365
2366 Strain fitness (log2 ratio)
-1
0
1 at 2363.936 kb on + strand, within ABID97_RS11450 at 2363.937 kb on - strand, within ABID97_RS11450 at 2364.866 kb on - strand at 2365.018 kb on + strand, within ABID97_RS11460 at 2365.022 kb on + strand, within ABID97_RS11460 at 2365.023 kb on - strand, within ABID97_RS11460 at 2365.371 kb on + strand, within ABID97_RS11460 at 2365.371 kb on + strand, within ABID97_RS11460 at 2365.372 kb on - strand, within ABID97_RS11460 at 2366.327 kb on + strand, within ABID97_RS11470 at 2366.327 kb on + strand, within ABID97_RS11470
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 2,363,936 + ABID97_RS11450 0.66 -0.4 2,363,937 - ABID97_RS11450 0.67 +0.4 2,364,866 - +0.7 2,365,018 + ABID97_RS11460 0.29 +0.3 2,365,022 + ABID97_RS11460 0.30 -0.4 2,365,023 - ABID97_RS11460 0.30 -0.2 2,365,371 + ABID97_RS11460 0.90 -0.0 2,365,371 + ABID97_RS11460 0.90 -0.2 2,365,372 - ABID97_RS11460 0.90 -1.3 2,366,327 + ABID97_RS11470 0.13 -0.7 2,366,327 + ABID97_RS11470 0.13 +0.8
Or see this region's nucleotide sequence