Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11460

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11450 and ABID97_RS11455 overlap by 16 nucleotidesABID97_RS11455 and ABID97_RS11460 are separated by 530 nucleotidesABID97_RS11460 and ABID97_RS11465 overlap by 4 nucleotidesABID97_RS11465 and ABID97_RS11470 are separated by 55 nucleotides ABID97_RS11450: ABID97_RS11450 - TetR/AcrR family transcriptional regulator, at 2,363,526 to 2,364,143 _RS11450 ABID97_RS11455: ABID97_RS11455 - hypothetical protein, at 2,364,128 to 2,364,316 _RS11455 ABID97_RS11460: ABID97_RS11460 - 2-hydroxychromene-2-carboxylate isomerase, at 2,364,847 to 2,365,431 _RS11460 ABID97_RS11465: ABID97_RS11465 - SDR family NAD(P)-dependent oxidoreductase, at 2,365,428 to 2,366,126 _RS11465 ABID97_RS11470: ABID97_RS11470 - zinc-binding dehydrogenase, at 2,366,182 to 2,367,309 _RS11470 Position (kb) 2364 2365 2366Strain fitness (log2 ratio) -1 0 1at 2363.936 kb on + strand, within ABID97_RS11450at 2363.937 kb on - strand, within ABID97_RS11450at 2364.866 kb on - strandat 2365.018 kb on + strand, within ABID97_RS11460at 2365.022 kb on + strand, within ABID97_RS11460at 2365.023 kb on - strand, within ABID97_RS11460at 2365.371 kb on + strand, within ABID97_RS11460at 2365.371 kb on + strand, within ABID97_RS11460at 2365.372 kb on - strand, within ABID97_RS11460at 2366.327 kb on + strand, within ABID97_RS11470at 2366.327 kb on + strand, within ABID97_RS11470

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,363,936 + ABID97_RS11450 0.66 -0.4
2,363,937 - ABID97_RS11450 0.67 +0.4
2,364,866 - +0.7
2,365,018 + ABID97_RS11460 0.29 +0.3
2,365,022 + ABID97_RS11460 0.30 -0.4
2,365,023 - ABID97_RS11460 0.30 -0.2
2,365,371 + ABID97_RS11460 0.90 -0.0
2,365,371 + ABID97_RS11460 0.90 -0.2
2,365,372 - ABID97_RS11460 0.90 -1.3
2,366,327 + ABID97_RS11470 0.13 -0.7
2,366,327 + ABID97_RS11470 0.13 +0.8

Or see this region's nucleotide sequence