Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11195

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11185 and ABID97_RS11190 overlap by 4 nucleotidesABID97_RS11190 and ABID97_RS11195 are separated by 78 nucleotidesABID97_RS11195 and ABID97_RS11200 overlap by 20 nucleotidesABID97_RS11200 and ABID97_RS11205 overlap by 4 nucleotides ABID97_RS11185: ABID97_RS11185 - transketolase C-terminal domain-containing protein, at 2,313,318 to 2,314,340 _RS11185 ABID97_RS11190: ABID97_RS11190 - transketolase, at 2,314,337 to 2,315,218 _RS11190 ABID97_RS11195: ABID97_RS11195 - ABC transporter ATP-binding protein, at 2,315,297 to 2,316,013 _RS11195 ABID97_RS11200: ABID97_RS11200 - ABC transporter ATP-binding protein, at 2,315,994 to 2,316,740 _RS11200 ABID97_RS11205: ABID97_RS11205 - branched-chain amino acid ABC transporter permease, at 2,316,737 to 2,317,771 _RS11205 Position (kb) 2315 2316 2317Strain fitness (log2 ratio) -2 -1 0 1 2at 2314.395 kb on + strandat 2314.395 kb on + strandat 2314.429 kb on - strand, within ABID97_RS11190at 2314.894 kb on - strand, within ABID97_RS11190at 2315.034 kb on + strand, within ABID97_RS11190at 2315.310 kb on + strandat 2315.311 kb on - strandat 2315.507 kb on + strand, within ABID97_RS11195at 2315.537 kb on + strand, within ABID97_RS11195at 2315.537 kb on + strand, within ABID97_RS11195at 2315.538 kb on - strand, within ABID97_RS11195at 2315.870 kb on + strand, within ABID97_RS11195at 2315.871 kb on - strand, within ABID97_RS11195at 2316.014 kb on - strandat 2316.014 kb on - strandat 2316.028 kb on + strandat 2316.028 kb on + strandat 2316.028 kb on + strandat 2316.029 kb on - strandat 2316.846 kb on + strand, within ABID97_RS11205

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,314,395 + -0.5
2,314,395 + +1.7
2,314,429 - ABID97_RS11190 0.10 +0.8
2,314,894 - ABID97_RS11190 0.63 -2.1
2,315,034 + ABID97_RS11190 0.79 +0.7
2,315,310 + +0.0
2,315,311 - -0.0
2,315,507 + ABID97_RS11195 0.29 -0.0
2,315,537 + ABID97_RS11195 0.33 -0.6
2,315,537 + ABID97_RS11195 0.33 -1.1
2,315,538 - ABID97_RS11195 0.34 -0.8
2,315,870 + ABID97_RS11195 0.80 -0.4
2,315,871 - ABID97_RS11195 0.80 -0.3
2,316,014 - -1.1
2,316,014 - +0.0
2,316,028 + +2.1
2,316,028 + +0.6
2,316,028 + -1.2
2,316,029 - +1.5
2,316,846 + ABID97_RS11205 0.11 -0.7

Or see this region's nucleotide sequence