Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10360 and ABID97_RS10365 are separated by 76 nucleotides ABID97_RS10365 and ABID97_RS10370 are separated by 40 nucleotides ABID97_RS10370 and ABID97_RS10375 are separated by 25 nucleotides
ABID97_RS10360: ABID97_RS10360 - tripartite tricarboxylate transporter substrate binding protein, at 2,151,204 to 2,152,178
_RS10360
ABID97_RS10365: ABID97_RS10365 - 5-dehydro-4-deoxyglucarate dehydratase, at 2,152,255 to 2,153,166
_RS10365
ABID97_RS10370: ABID97_RS10370 - nuclear transport factor 2 family protein, at 2,153,207 to 2,153,656
_RS10370
ABID97_RS10375: ABID97_RS10375 - glucarate dehydratase, at 2,153,682 to 2,155,040
_RS10375
Position (kb)
2152
2153
2154 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2151.579 kb on + strand, within ABID97_RS10360 at 2151.579 kb on + strand, within ABID97_RS10360 at 2151.747 kb on + strand, within ABID97_RS10360 at 2151.747 kb on + strand, within ABID97_RS10360 at 2151.748 kb on - strand, within ABID97_RS10360 at 2151.748 kb on - strand, within ABID97_RS10360 at 2151.748 kb on - strand, within ABID97_RS10360 at 2151.757 kb on - strand, within ABID97_RS10360 at 2152.147 kb on + strand at 2152.148 kb on - strand at 2152.176 kb on + strand at 2152.176 kb on + strand at 2152.176 kb on + strand at 2152.448 kb on - strand, within ABID97_RS10365 at 2152.676 kb on - strand, within ABID97_RS10365 at 2152.850 kb on - strand, within ABID97_RS10365 at 2152.850 kb on - strand, within ABID97_RS10365 at 2152.850 kb on - strand, within ABID97_RS10365 at 2152.850 kb on - strand, within ABID97_RS10365 at 2152.861 kb on + strand, within ABID97_RS10365 at 2152.861 kb on + strand, within ABID97_RS10365 at 2152.861 kb on + strand, within ABID97_RS10365 at 2152.885 kb on + strand, within ABID97_RS10365 at 2152.933 kb on + strand, within ABID97_RS10365 at 2152.933 kb on + strand, within ABID97_RS10365 at 2153.393 kb on + strand, within ABID97_RS10370 at 2153.393 kb on + strand, within ABID97_RS10370 at 2153.393 kb on + strand, within ABID97_RS10370 at 2153.654 kb on + strand at 2153.655 kb on - strand at 2154.160 kb on - strand, within ABID97_RS10375 at 2154.160 kb on - strand, within ABID97_RS10375
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 2,151,579 + ABID97_RS10360 0.38 +0.8 2,151,579 + ABID97_RS10360 0.38 +2.7 2,151,747 + ABID97_RS10360 0.56 +0.2 2,151,747 + ABID97_RS10360 0.56 +2.3 2,151,748 - ABID97_RS10360 0.56 +1.5 2,151,748 - ABID97_RS10360 0.56 +2.0 2,151,748 - ABID97_RS10360 0.56 +2.8 2,151,757 - ABID97_RS10360 0.57 +2.1 2,152,147 + +2.2 2,152,148 - +2.1 2,152,176 + +1.6 2,152,176 + +0.9 2,152,176 + +1.0 2,152,448 - ABID97_RS10365 0.21 -0.1 2,152,676 - ABID97_RS10365 0.46 +0.8 2,152,850 - ABID97_RS10365 0.65 -0.1 2,152,850 - ABID97_RS10365 0.65 -1.6 2,152,850 - ABID97_RS10365 0.65 -0.9 2,152,850 - ABID97_RS10365 0.65 -1.1 2,152,861 + ABID97_RS10365 0.66 -1.0 2,152,861 + ABID97_RS10365 0.66 -0.3 2,152,861 + ABID97_RS10365 0.66 -2.4 2,152,885 + ABID97_RS10365 0.69 -1.0 2,152,933 + ABID97_RS10365 0.74 -2.0 2,152,933 + ABID97_RS10365 0.74 -0.7 2,153,393 + ABID97_RS10370 0.41 -1.0 2,153,393 + ABID97_RS10370 0.41 +1.6 2,153,393 + ABID97_RS10370 0.41 +0.2 2,153,654 + -0.2 2,153,655 - -0.1 2,154,160 - ABID97_RS10375 0.35 +0.6 2,154,160 - ABID97_RS10375 0.35 -0.4
Or see this region's nucleotide sequence