Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09375 and ABID97_RS09380 overlap by 4 nucleotides ABID97_RS09380 and ABID97_RS09385 are separated by 116 nucleotides ABID97_RS09385 and ABID97_RS09390 are separated by 4 nucleotides
ABID97_RS09375: ABID97_RS09375 - ATP-binding cassette domain-containing protein, at 1,971,170 to 1,971,889
_RS09375
ABID97_RS09380: ABID97_RS09380 - substrate-binding domain-containing protein, at 1,971,886 to 1,972,743
_RS09380
ABID97_RS09385: ABID97_RS09385 - nuclear transport factor 2 family protein, at 1,972,860 to 1,973,237
_RS09385
ABID97_RS09390: ABID97_RS09390 - helix-turn-helix domain-containing protein, at 1,973,242 to 1,974,381
_RS09390
Position (kb) 1972
1973
1974 Strain fitness (log2 ratio) -2
-1
0
1 at 1972.213 kb on + strand, within ABID97_RS09380 at 1972.213 kb on + strand, within ABID97_RS09380 at 1972.213 kb on + strand, within ABID97_RS09380 at 1972.213 kb on + strand, within ABID97_RS09380 at 1972.489 kb on + strand, within ABID97_RS09380 at 1972.489 kb on + strand, within ABID97_RS09380 at 1972.490 kb on - strand, within ABID97_RS09380 at 1972.490 kb on - strand, within ABID97_RS09380 at 1972.693 kb on + strand at 1972.693 kb on + strand at 1972.902 kb on + strand, within ABID97_RS09385 at 1973.956 kb on + strand, within ABID97_RS09390 at 1973.957 kb on - strand, within ABID97_RS09390
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,972,213 + ABID97_RS09380 0.38 +0.4 1,972,213 + ABID97_RS09380 0.38 +1.5 1,972,213 + ABID97_RS09380 0.38 -1.2 1,972,213 + ABID97_RS09380 0.38 -1.9 1,972,489 + ABID97_RS09380 0.70 -0.3 1,972,489 + ABID97_RS09380 0.70 -0.7 1,972,490 - ABID97_RS09380 0.70 +0.4 1,972,490 - ABID97_RS09380 0.70 -0.1 1,972,693 + -0.1 1,972,693 + -0.3 1,972,902 + ABID97_RS09385 0.11 -0.5 1,973,956 + ABID97_RS09390 0.63 +0.5 1,973,957 - ABID97_RS09390 0.63 -0.5
Or see this region's nucleotide sequence