Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08380 and ABID97_RS08385 are separated by 13 nucleotides ABID97_RS08385 and ABID97_RS08390 overlap by 4 nucleotides ABID97_RS08390 and ABID97_RS08395 are separated by 7 nucleotides ABID97_RS08395 and ABID97_RS08400 overlap by 4 nucleotides
ABID97_RS08380: ABID97_RS08380 - pyridoxine 5'-phosphate synthase, at 1,760,824 to 1,761,588
_RS08380
ABID97_RS08385: ABID97_RS08385 - holo-ACP synthase, at 1,761,602 to 1,762,003
_RS08385
ABID97_RS08390: ABID97_RS08390 - beta-N-acetylhexosaminidase, at 1,762,000 to 1,763,106
_RS08390
ABID97_RS08395: ABID97_RS08395 - M48 family metallopeptidase, at 1,763,114 to 1,763,656
_RS08395
ABID97_RS08400: ABID97_RS08400 - Hsp70 family protein, at 1,763,653 to 1,764,915
_RS08400
Position (kb) 1761
1762
1763
1764 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1761.986 kb on + strand at 1761.987 kb on - strand at 1762.403 kb on - strand, within ABID97_RS08390 at 1762.622 kb on - strand, within ABID97_RS08390 at 1762.622 kb on - strand, within ABID97_RS08390 at 1762.672 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.819 kb on + strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1762.820 kb on - strand, within ABID97_RS08390 at 1763.044 kb on + strand at 1763.045 kb on - strand at 1763.093 kb on - strand at 1763.093 kb on - strand at 1763.093 kb on - strand at 1763.115 kb on + strand at 1763.116 kb on - strand at 1763.256 kb on + strand, within ABID97_RS08395 at 1763.256 kb on + strand, within ABID97_RS08395 at 1763.256 kb on + strand, within ABID97_RS08395 at 1763.256 kb on + strand, within ABID97_RS08395 at 1763.257 kb on - strand, within ABID97_RS08395 at 1763.515 kb on - strand, within ABID97_RS08395 at 1763.515 kb on - strand, within ABID97_RS08395 at 1763.515 kb on - strand, within ABID97_RS08395 at 1763.520 kb on + strand, within ABID97_RS08395 at 1763.520 kb on + strand, within ABID97_RS08395 at 1763.521 kb on - strand, within ABID97_RS08395 at 1763.521 kb on - strand, within ABID97_RS08395 at 1763.649 kb on + strand at 1763.650 kb on - strand at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.789 kb on + strand, within ABID97_RS08400 at 1763.790 kb on - strand, within ABID97_RS08400 at 1763.790 kb on - strand, within ABID97_RS08400 at 1764.065 kb on + strand, within ABID97_RS08400 at 1764.066 kb on - strand, within ABID97_RS08400 at 1764.066 kb on - strand, within ABID97_RS08400 at 1764.066 kb on - strand, within ABID97_RS08400
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,761,986 + -0.3 1,761,987 - -2.2 1,762,403 - ABID97_RS08390 0.36 -0.5 1,762,622 - ABID97_RS08390 0.56 -0.2 1,762,622 - ABID97_RS08390 0.56 -0.6 1,762,672 + ABID97_RS08390 0.61 -1.3 1,762,819 + ABID97_RS08390 0.74 -2.3 1,762,819 + ABID97_RS08390 0.74 +0.6 1,762,819 + ABID97_RS08390 0.74 -1.0 1,762,819 + ABID97_RS08390 0.74 +1.3 1,762,820 - ABID97_RS08390 0.74 -0.9 1,762,820 - ABID97_RS08390 0.74 -0.8 1,762,820 - ABID97_RS08390 0.74 -1.5 1,762,820 - ABID97_RS08390 0.74 -0.2 1,763,044 + -1.0 1,763,045 - -0.9 1,763,093 - +0.1 1,763,093 - +1.4 1,763,093 - -0.4 1,763,115 + +1.3 1,763,116 - -0.7 1,763,256 + ABID97_RS08395 0.26 +0.2 1,763,256 + ABID97_RS08395 0.26 -0.4 1,763,256 + ABID97_RS08395 0.26 +0.6 1,763,256 + ABID97_RS08395 0.26 -2.7 1,763,257 - ABID97_RS08395 0.26 +0.3 1,763,515 - ABID97_RS08395 0.74 -0.3 1,763,515 - ABID97_RS08395 0.74 -1.3 1,763,515 - ABID97_RS08395 0.74 +2.1 1,763,520 + ABID97_RS08395 0.75 +0.7 1,763,520 + ABID97_RS08395 0.75 +0.3 1,763,521 - ABID97_RS08395 0.75 -0.7 1,763,521 - ABID97_RS08395 0.75 +0.2 1,763,649 + -0.4 1,763,650 - +0.9 1,763,789 + ABID97_RS08400 0.11 -0.9 1,763,789 + ABID97_RS08400 0.11 -1.8 1,763,789 + ABID97_RS08400 0.11 +0.7 1,763,789 + ABID97_RS08400 0.11 +1.4 1,763,789 + ABID97_RS08400 0.11 -0.3 1,763,790 - ABID97_RS08400 0.11 +0.1 1,763,790 - ABID97_RS08400 0.11 -0.2 1,764,065 + ABID97_RS08400 0.33 +0.3 1,764,066 - ABID97_RS08400 0.33 -0.4 1,764,066 - ABID97_RS08400 0.33 +1.0 1,764,066 - ABID97_RS08400 0.33 +0.2
Or see this region's nucleotide sequence