Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07340 and ABID97_RS07345 are separated by 38 nucleotides ABID97_RS07345 and ABID97_RS07350 are separated by 54 nucleotides ABID97_RS07350 and ABID97_RS07355 are separated by 179 nucleotides ABID97_RS07355 and ABID97_RS07360 are separated by 131 nucleotides ABID97_RS07360 and ABID97_RS07365 are separated by 64 nucleotides
ABID97_RS07340: ABID97_RS07340 - hypothetical protein, at 1,553,934 to 1,554,317
_RS07340
ABID97_RS07345: ABID97_RS07345 - hypothetical protein, at 1,554,356 to 1,554,733
_RS07345
ABID97_RS07350: ABID97_RS07350 - DUF1328 domain-containing protein, at 1,554,788 to 1,554,952
_RS07350
ABID97_RS07355: ABID97_RS07355 - CHASE3 domain-containing protein, at 1,555,132 to 1,556,451
_RS07355
ABID97_RS07360: ABID97_RS07360 - response regulator transcription factor, at 1,556,583 to 1,557,215
_RS07360
ABID97_RS07365: ABID97_RS07365 - response regulator, at 1,557,280 to 1,557,684
_RS07365
Position (kb) 1555
1556
1557 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 1554.250 kb on + strand, within ABID97_RS07340 at 1554.251 kb on - strand, within ABID97_RS07340 at 1554.361 kb on - strand at 1554.648 kb on + strand, within ABID97_RS07345 at 1554.648 kb on + strand, within ABID97_RS07345 at 1554.649 kb on - strand, within ABID97_RS07345 at 1554.780 kb on + strand at 1554.781 kb on - strand at 1554.870 kb on - strand, within ABID97_RS07350 at 1554.942 kb on + strand at 1554.942 kb on + strand at 1554.943 kb on - strand at 1555.027 kb on + strand at 1555.027 kb on + strand at 1555.027 kb on + strand at 1555.028 kb on - strand at 1555.028 kb on - strand at 1555.028 kb on - strand at 1555.028 kb on - strand at 1555.028 kb on - strand at 1555.028 kb on - strand at 1555.028 kb on - strand at 1555.028 kb on - strand at 1555.075 kb on + strand at 1555.076 kb on - strand at 1555.280 kb on - strand, within ABID97_RS07355 at 1555.325 kb on + strand, within ABID97_RS07355 at 1555.326 kb on - strand, within ABID97_RS07355 at 1555.365 kb on - strand, within ABID97_RS07355 at 1555.380 kb on + strand, within ABID97_RS07355 at 1555.380 kb on + strand, within ABID97_RS07355 at 1555.381 kb on - strand, within ABID97_RS07355 at 1555.403 kb on + strand, within ABID97_RS07355 at 1555.877 kb on + strand, within ABID97_RS07355 at 1556.273 kb on + strand, within ABID97_RS07355 at 1556.273 kb on + strand, within ABID97_RS07355 at 1556.273 kb on + strand, within ABID97_RS07355 at 1556.274 kb on - strand, within ABID97_RS07355 at 1556.464 kb on + strand at 1556.465 kb on - strand at 1556.514 kb on - strand at 1556.883 kb on + strand, within ABID97_RS07360 at 1556.883 kb on + strand, within ABID97_RS07360 at 1556.952 kb on + strand, within ABID97_RS07360 at 1556.952 kb on + strand, within ABID97_RS07360 at 1556.952 kb on + strand, within ABID97_RS07360 at 1556.953 kb on - strand, within ABID97_RS07360 at 1557.129 kb on + strand, within ABID97_RS07360 at 1557.129 kb on + strand, within ABID97_RS07360 at 1557.129 kb on + strand, within ABID97_RS07360 at 1557.130 kb on - strand, within ABID97_RS07360 at 1557.130 kb on - strand, within ABID97_RS07360 at 1557.183 kb on + strand at 1557.183 kb on + strand at 1557.183 kb on + strand at 1557.184 kb on - strand at 1557.184 kb on - strand at 1557.186 kb on + strand at 1557.186 kb on + strand at 1557.187 kb on - strand at 1557.187 kb on - strand at 1557.419 kb on + strand, within ABID97_RS07365 at 1557.420 kb on - strand, within ABID97_RS07365
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,554,250 + ABID97_RS07340 0.82 -0.1 1,554,251 - ABID97_RS07340 0.83 -1.2 1,554,361 - +0.5 1,554,648 + ABID97_RS07345 0.77 -0.7 1,554,648 + ABID97_RS07345 0.77 -0.6 1,554,649 - ABID97_RS07345 0.78 +0.4 1,554,780 + +2.1 1,554,781 - -0.4 1,554,870 - ABID97_RS07350 0.50 +0.5 1,554,942 + +0.2 1,554,942 + +0.2 1,554,943 - -0.4 1,555,027 + -0.1 1,555,027 + -1.3 1,555,027 + -0.1 1,555,028 - -0.1 1,555,028 - +0.2 1,555,028 - -1.2 1,555,028 - +0.1 1,555,028 - -0.2 1,555,028 - -0.6 1,555,028 - +0.1 1,555,028 - +0.4 1,555,075 + +0.3 1,555,076 - -0.1 1,555,280 - ABID97_RS07355 0.11 -0.5 1,555,325 + ABID97_RS07355 0.15 -1.3 1,555,326 - ABID97_RS07355 0.15 -1.1 1,555,365 - ABID97_RS07355 0.18 -1.7 1,555,380 + ABID97_RS07355 0.19 -1.0 1,555,380 + ABID97_RS07355 0.19 -0.7 1,555,381 - ABID97_RS07355 0.19 -0.8 1,555,403 + ABID97_RS07355 0.21 -1.0 1,555,877 + ABID97_RS07355 0.56 -0.6 1,556,273 + ABID97_RS07355 0.86 +1.6 1,556,273 + ABID97_RS07355 0.86 -1.4 1,556,273 + ABID97_RS07355 0.86 -1.2 1,556,274 - ABID97_RS07355 0.87 -2.1 1,556,464 + -1.6 1,556,465 - +0.6 1,556,514 - +0.1 1,556,883 + ABID97_RS07360 0.47 +6.1 1,556,883 + ABID97_RS07360 0.47 +5.6 1,556,952 + ABID97_RS07360 0.58 +6.0 1,556,952 + ABID97_RS07360 0.58 +6.0 1,556,952 + ABID97_RS07360 0.58 +5.9 1,556,953 - ABID97_RS07360 0.58 +6.5 1,557,129 + ABID97_RS07360 0.86 +6.0 1,557,129 + ABID97_RS07360 0.86 +6.0 1,557,129 + ABID97_RS07360 0.86 +6.0 1,557,130 - ABID97_RS07360 0.86 +5.6 1,557,130 - ABID97_RS07360 0.86 +6.5 1,557,183 + +6.3 1,557,183 + +6.0 1,557,183 + +6.1 1,557,184 - +6.1 1,557,184 - +6.2 1,557,186 + +5.7 1,557,186 + +5.9 1,557,187 - +6.0 1,557,187 - +6.2 1,557,419 + ABID97_RS07365 0.34 +1.9 1,557,420 - ABID97_RS07365 0.35 -0.3
Or see this region's nucleotide sequence