Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06830

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS06825 and ABID97_RS06830 are separated by 155 nucleotidesABID97_RS06830 and ABID97_RS06835 are separated by 54 nucleotides ABID97_RS06825: ABID97_RS06825 - LysR family transcriptional regulator, at 1,439,530 to 1,440,489 _RS06825 ABID97_RS06830: ABID97_RS06830 - aldehyde dehydrogenase family protein, at 1,440,645 to 1,442,096 _RS06830 ABID97_RS06835: ABID97_RS06835 - ABC transporter substrate-binding protein, at 1,442,151 to 1,443,116 _RS06835 Position (kb) 1440 1441 1442 1443Strain fitness (log2 ratio) -3 -2 -1 0 1at 1439.703 kb on - strand, within ABID97_RS06825at 1440.479 kb on + strandat 1440.479 kb on + strandat 1440.479 kb on + strandat 1440.479 kb on + strandat 1440.479 kb on + strandat 1440.479 kb on + strandat 1440.479 kb on + strandat 1440.480 kb on - strandat 1440.480 kb on - strandat 1440.480 kb on - strandat 1440.599 kb on - strandat 1440.681 kb on + strandat 1440.681 kb on + strandat 1440.762 kb on + strandat 1440.763 kb on - strandat 1441.743 kb on + strand, within ABID97_RS06830at 1441.743 kb on + strand, within ABID97_RS06830at 1442.062 kb on - strandat 1442.133 kb on + strandat 1442.134 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
1,439,703 - ABID97_RS06825 0.18 -1.0
1,440,479 + -0.4
1,440,479 + -0.1
1,440,479 + +0.2
1,440,479 + -0.2
1,440,479 + +0.1
1,440,479 + -0.7
1,440,479 + -0.6
1,440,480 - +0.3
1,440,480 - -0.1
1,440,480 - -0.8
1,440,599 - -0.2
1,440,681 + +0.2
1,440,681 + -0.1
1,440,762 + -0.5
1,440,763 - -0.7
1,441,743 + ABID97_RS06830 0.76 -2.9
1,441,743 + ABID97_RS06830 0.76 -0.6
1,442,062 - -0.6
1,442,133 + -0.7
1,442,134 - -0.4

Or see this region's nucleotide sequence