Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06720

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06715 and ABID97_RS06720 are separated by 177 nucleotidesABID97_RS06720 and ABID97_RS06725 are separated by 40 nucleotides ABID97_RS06715: ABID97_RS06715 - S9 family peptidase, at 1,414,507 to 1,416,561 _RS06715 ABID97_RS06720: ABID97_RS06720 - manganese catalase family protein, at 1,416,739 to 1,417,656 _RS06720 ABID97_RS06725: ABID97_RS06725 - NAD(P)/FAD-dependent oxidoreductase, at 1,417,697 to 1,418,623 _RS06725 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -2 -1 0 1at 1415.923 kb on + strand, within ABID97_RS06715at 1415.923 kb on + strand, within ABID97_RS06715at 1415.924 kb on - strand, within ABID97_RS06715at 1416.632 kb on + strandat 1416.632 kb on + strandat 1416.633 kb on - strandat 1416.766 kb on + strandat 1416.767 kb on - strandat 1416.862 kb on + strand, within ABID97_RS06720at 1417.315 kb on + strand, within ABID97_RS06720at 1417.315 kb on + strand, within ABID97_RS06720at 1417.378 kb on + strand, within ABID97_RS06720at 1417.379 kb on - strand, within ABID97_RS06720at 1417.441 kb on + strand, within ABID97_RS06720at 1417.442 kb on - strand, within ABID97_RS06720at 1417.853 kb on + strand, within ABID97_RS06725at 1417.923 kb on - strand, within ABID97_RS06725at 1418.123 kb on + strand, within ABID97_RS06725at 1418.153 kb on + strand, within ABID97_RS06725at 1418.153 kb on + strand, within ABID97_RS06725at 1418.189 kb on + strand, within ABID97_RS06725at 1418.382 kb on - strand, within ABID97_RS06725at 1418.382 kb on - strand, within ABID97_RS06725at 1418.453 kb on + strand, within ABID97_RS06725at 1418.498 kb on + strand, within ABID97_RS06725

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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1,415,923 + ABID97_RS06715 0.69 -0.0
1,415,923 + ABID97_RS06715 0.69 -0.7
1,415,924 - ABID97_RS06715 0.69 +0.1
1,416,632 + -0.4
1,416,632 + +0.1
1,416,633 - +0.3
1,416,766 + +0.3
1,416,767 - +0.8
1,416,862 + ABID97_RS06720 0.13 -2.3
1,417,315 + ABID97_RS06720 0.63 +0.1
1,417,315 + ABID97_RS06720 0.63 -0.4
1,417,378 + ABID97_RS06720 0.70 +0.6
1,417,379 - ABID97_RS06720 0.70 +0.1
1,417,441 + ABID97_RS06720 0.76 -0.1
1,417,442 - ABID97_RS06720 0.77 +0.0
1,417,853 + ABID97_RS06725 0.17 +0.0
1,417,923 - ABID97_RS06725 0.24 +0.2
1,418,123 + ABID97_RS06725 0.46 -0.1
1,418,153 + ABID97_RS06725 0.49 -0.6
1,418,153 + ABID97_RS06725 0.49 +0.5
1,418,189 + ABID97_RS06725 0.53 -0.7
1,418,382 - ABID97_RS06725 0.74 +1.5
1,418,382 - ABID97_RS06725 0.74 -0.1
1,418,453 + ABID97_RS06725 0.82 -0.5
1,418,498 + ABID97_RS06725 0.86 -0.0

Or see this region's nucleotide sequence