Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06405

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06400 and ABID97_RS06405 are separated by 177 nucleotidesABID97_RS06405 and ABID97_RS06410 are separated by 350 nucleotidesABID97_RS06410 and ABID97_RS06415 overlap by 8 nucleotides ABID97_RS06400: ABID97_RS06400 - ribonucleotide-diphosphate reductase subunit beta, at 1,350,333 to 1,351,511 _RS06400 ABID97_RS06405: ABID97_RS06405 - ribonucleoside-diphosphate reductase subunit alpha, at 1,351,689 to 1,354,602 _RS06405 ABID97_RS06410: ABID97_RS06410 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 1,354,953 to 1,355,570 _RS06410 ABID97_RS06415: ABID97_RS06415 - sigma-54 dependent transcriptional regulator, at 1,355,563 to 1,357,110 _RS06415 Position (kb) 1351 1352 1353 1354 1355Strain fitness (log2 ratio) -3 -2 -1 0 1at 1351.585 kb on - strandat 1351.585 kb on - strandat 1351.585 kb on - strandat 1351.585 kb on - strandat 1351.585 kb on - strandat 1351.585 kb on - strandat 1351.585 kb on - strandat 1351.596 kb on - strandat 1351.596 kb on - strandat 1351.596 kb on - strandat 1351.596 kb on - strandat 1351.596 kb on - strandat 1351.596 kb on - strandat 1351.674 kb on + strandat 1351.675 kb on - strandat 1351.675 kb on - strandat 1354.690 kb on - strandat 1354.690 kb on - strandat 1354.690 kb on - strandat 1354.690 kb on - strandat 1354.690 kb on - strandat 1354.690 kb on - strandat 1354.691 kb on + strandat 1354.691 kb on + strandat 1354.691 kb on + strandat 1354.691 kb on + strandat 1354.691 kb on + strandat 1354.691 kb on + strandat 1354.692 kb on - strandat 1354.692 kb on - strandat 1354.692 kb on - strandat 1354.692 kb on - strandat 1354.696 kb on - strandat 1354.727 kb on + strandat 1354.728 kb on - strandat 1354.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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1,351,585 - -0.1
1,351,585 - +0.2
1,351,585 - +0.1
1,351,585 - +0.5
1,351,585 - +0.4
1,351,585 - +0.5
1,351,585 - +0.5
1,351,596 - +0.2
1,351,596 - +0.1
1,351,596 - -0.1
1,351,596 - -0.1
1,351,596 - -0.4
1,351,596 - -0.1
1,351,674 + +1.0
1,351,675 - +1.0
1,351,675 - -1.1
1,354,690 - +0.1
1,354,690 - -0.3
1,354,690 - -2.8
1,354,690 - -1.5
1,354,690 - +0.6
1,354,690 - +0.4
1,354,691 + -0.3
1,354,691 + -0.6
1,354,691 + -0.6
1,354,691 + -0.9
1,354,691 + -1.5
1,354,691 + -1.9
1,354,692 - -1.0
1,354,692 - +0.6
1,354,692 - -1.3
1,354,692 - -2.2
1,354,696 - -0.9
1,354,727 + -0.6
1,354,728 - +0.3
1,354,758 + +0.1

Or see this region's nucleotide sequence