Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06400 and ABID97_RS06405 are separated by 177 nucleotides ABID97_RS06405 and ABID97_RS06410 are separated by 350 nucleotides ABID97_RS06410 and ABID97_RS06415 overlap by 8 nucleotides
ABID97_RS06400: ABID97_RS06400 - ribonucleotide-diphosphate reductase subunit beta, at 1,350,333 to 1,351,511
_RS06400
ABID97_RS06405: ABID97_RS06405 - ribonucleoside-diphosphate reductase subunit alpha, at 1,351,689 to 1,354,602
_RS06405
ABID97_RS06410: ABID97_RS06410 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 1,354,953 to 1,355,570
_RS06410
ABID97_RS06415: ABID97_RS06415 - sigma-54 dependent transcriptional regulator, at 1,355,563 to 1,357,110
_RS06415
Position (kb)
1351
1352
1353
1354
1355 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1351.585 kb on - strand at 1351.585 kb on - strand at 1351.585 kb on - strand at 1351.585 kb on - strand at 1351.585 kb on - strand at 1351.585 kb on - strand at 1351.585 kb on - strand at 1351.596 kb on - strand at 1351.596 kb on - strand at 1351.596 kb on - strand at 1351.596 kb on - strand at 1351.596 kb on - strand at 1351.596 kb on - strand at 1351.674 kb on + strand at 1351.675 kb on - strand at 1351.675 kb on - strand at 1354.690 kb on - strand at 1354.690 kb on - strand at 1354.690 kb on - strand at 1354.690 kb on - strand at 1354.690 kb on - strand at 1354.690 kb on - strand at 1354.691 kb on + strand at 1354.691 kb on + strand at 1354.691 kb on + strand at 1354.691 kb on + strand at 1354.691 kb on + strand at 1354.691 kb on + strand at 1354.692 kb on - strand at 1354.692 kb on - strand at 1354.692 kb on - strand at 1354.692 kb on - strand at 1354.696 kb on - strand at 1354.727 kb on + strand at 1354.728 kb on - strand at 1354.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,351,585 - -0.1 1,351,585 - +0.2 1,351,585 - +0.1 1,351,585 - +0.5 1,351,585 - +0.4 1,351,585 - +0.5 1,351,585 - +0.5 1,351,596 - +0.2 1,351,596 - +0.1 1,351,596 - -0.1 1,351,596 - -0.1 1,351,596 - -0.4 1,351,596 - -0.1 1,351,674 + +1.0 1,351,675 - +1.0 1,351,675 - -1.1 1,354,690 - +0.1 1,354,690 - -0.3 1,354,690 - -2.8 1,354,690 - -1.5 1,354,690 - +0.6 1,354,690 - +0.4 1,354,691 + -0.3 1,354,691 + -0.6 1,354,691 + -0.6 1,354,691 + -0.9 1,354,691 + -1.5 1,354,691 + -1.9 1,354,692 - -1.0 1,354,692 - +0.6 1,354,692 - -1.3 1,354,692 - -2.2 1,354,696 - -0.9 1,354,727 + -0.6 1,354,728 - +0.3 1,354,758 + +0.1
Or see this region's nucleotide sequence