Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06175

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06170 and ABID97_RS06175 are separated by 44 nucleotidesABID97_RS06175 and ABID97_RS06180 are separated by 59 nucleotidesABID97_RS06180 and ABID97_RS06185 are separated by 2 nucleotides ABID97_RS06170: ABID97_RS06170 - RNA polymerase-binding protein DksA, at 1,301,496 to 1,302,482 _RS06170 ABID97_RS06175: ABID97_RS06175 - STAS domain-containing protein, at 1,302,527 to 1,304,209 _RS06175 ABID97_RS06180: ABID97_RS06180 - ATP-dependent protease subunit HslV, at 1,304,269 to 1,304,814 _RS06180 ABID97_RS06185: ABID97_RS06185 - ATP-dependent protease ATPase subunit HslU, at 1,304,817 to 1,306,145 _RS06185 Position (kb) 1302 1303 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1301.572 kb on + strandat 1301.573 kb on - strandat 1301.573 kb on - strandat 1301.837 kb on + strand, within ABID97_RS06170at 1301.837 kb on + strand, within ABID97_RS06170at 1302.357 kb on + strand, within ABID97_RS06170at 1302.644 kb on + strandat 1302.644 kb on + strandat 1302.769 kb on + strand, within ABID97_RS06175at 1302.769 kb on + strand, within ABID97_RS06175at 1303.287 kb on - strand, within ABID97_RS06175at 1303.334 kb on + strand, within ABID97_RS06175at 1303.334 kb on + strand, within ABID97_RS06175at 1303.334 kb on + strand, within ABID97_RS06175at 1303.422 kb on - strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.775 kb on + strand, within ABID97_RS06175at 1303.776 kb on - strand, within ABID97_RS06175at 1303.776 kb on - strand, within ABID97_RS06175at 1303.776 kb on - strand, within ABID97_RS06175at 1303.787 kb on + strand, within ABID97_RS06175at 1303.787 kb on + strand, within ABID97_RS06175at 1303.787 kb on + strand, within ABID97_RS06175at 1303.787 kb on + strand, within ABID97_RS06175at 1303.787 kb on + strand, within ABID97_RS06175at 1303.787 kb on + strand, within ABID97_RS06175at 1303.787 kb on + strand, within ABID97_RS06175at 1303.787 kb on + strand, within ABID97_RS06175at 1303.788 kb on - strand, within ABID97_RS06175at 1303.788 kb on - strand, within ABID97_RS06175at 1303.788 kb on - strand, within ABID97_RS06175at 1303.788 kb on - strand, within ABID97_RS06175at 1303.788 kb on - strand, within ABID97_RS06175at 1304.207 kb on + strandat 1304.207 kb on + strandat 1304.208 kb on - strandat 1304.680 kb on + strand, within ABID97_RS06180at 1304.680 kb on + strand, within ABID97_RS06180at 1304.681 kb on - strand, within ABID97_RS06180at 1304.681 kb on - strand, within ABID97_RS06180at 1305.084 kb on + strand, within ABID97_RS06185at 1305.084 kb on + strand, within ABID97_RS06185at 1305.084 kb on + strand, within ABID97_RS06185at 1305.085 kb on - strand, within ABID97_RS06185at 1305.085 kb on - strand, within ABID97_RS06185

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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1,301,572 + +0.4
1,301,573 - +0.6
1,301,573 - +2.9
1,301,837 + ABID97_RS06170 0.35 +3.3
1,301,837 + ABID97_RS06170 0.35 +3.6
1,302,357 + ABID97_RS06170 0.87 +2.9
1,302,644 + -1.5
1,302,644 + -0.0
1,302,769 + ABID97_RS06175 0.14 -2.0
1,302,769 + ABID97_RS06175 0.14 -1.4
1,303,287 - ABID97_RS06175 0.45 -1.2
1,303,334 + ABID97_RS06175 0.48 -0.8
1,303,334 + ABID97_RS06175 0.48 -0.4
1,303,334 + ABID97_RS06175 0.48 -1.9
1,303,422 - ABID97_RS06175 0.53 -1.2
1,303,775 + ABID97_RS06175 0.74 -1.2
1,303,775 + ABID97_RS06175 0.74 -1.1
1,303,775 + ABID97_RS06175 0.74 -2.4
1,303,775 + ABID97_RS06175 0.74 -1.6
1,303,775 + ABID97_RS06175 0.74 -1.2
1,303,775 + ABID97_RS06175 0.74 -0.2
1,303,775 + ABID97_RS06175 0.74 -0.7
1,303,775 + ABID97_RS06175 0.74 -1.3
1,303,775 + ABID97_RS06175 0.74 -1.5
1,303,775 + ABID97_RS06175 0.74 -1.4
1,303,775 + ABID97_RS06175 0.74 -1.0
1,303,776 - ABID97_RS06175 0.74 -2.6
1,303,776 - ABID97_RS06175 0.74 -1.7
1,303,776 - ABID97_RS06175 0.74 -0.9
1,303,787 + ABID97_RS06175 0.75 -0.5
1,303,787 + ABID97_RS06175 0.75 -2.3
1,303,787 + ABID97_RS06175 0.75 -1.3
1,303,787 + ABID97_RS06175 0.75 -2.3
1,303,787 + ABID97_RS06175 0.75 -1.9
1,303,787 + ABID97_RS06175 0.75 -1.6
1,303,787 + ABID97_RS06175 0.75 -1.2
1,303,787 + ABID97_RS06175 0.75 -1.4
1,303,788 - ABID97_RS06175 0.75 -0.3
1,303,788 - ABID97_RS06175 0.75 -1.2
1,303,788 - ABID97_RS06175 0.75 -0.5
1,303,788 - ABID97_RS06175 0.75 -1.9
1,303,788 - ABID97_RS06175 0.75 -2.8
1,304,207 + +0.1
1,304,207 + +0.5
1,304,208 - -0.0
1,304,680 + ABID97_RS06180 0.75 -0.9
1,304,680 + ABID97_RS06180 0.75 -0.8
1,304,681 - ABID97_RS06180 0.75 -1.6
1,304,681 - ABID97_RS06180 0.75 +0.8
1,305,084 + ABID97_RS06185 0.20 -0.8
1,305,084 + ABID97_RS06185 0.20 -0.8
1,305,084 + ABID97_RS06185 0.20 +0.0
1,305,085 - ABID97_RS06185 0.20 -0.8
1,305,085 - ABID97_RS06185 0.20 -0.9

Or see this region's nucleotide sequence