Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05845 and ABID97_RS05850 are separated by 126 nucleotides ABID97_RS05850 and ABID97_RS05855 are separated by 66 nucleotides ABID97_RS05855 and ABID97_RS05860 are separated by 38 nucleotides ABID97_RS05860 and ABID97_RS05865 are separated by 36 nucleotides
ABID97_RS05845: ABID97_RS05845 - SDR family oxidoreductase, at 1,235,096 to 1,235,854
_RS05845
ABID97_RS05850: ABID97_RS05850 - TetR/AcrR family transcriptional regulator, at 1,235,981 to 1,236,679
_RS05850
ABID97_RS05855: ABID97_RS05855 - acyl-CoA dehydrogenase C-terminal domain-containing protein, at 1,236,746 to 1,238,542
_RS05855
ABID97_RS05860: ABID97_RS05860 - DUF2147 domain-containing protein, at 1,238,581 to 1,239,015
_RS05860
ABID97_RS05865: ABID97_RS05865 - 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein, at 1,239,052 to 1,241,451
_RS05865
Position (kb) 1236
1237
1238
1239 Strain fitness (log2 ratio) -2
-1
0
1 at 1235.783 kb on + strand at 1235.784 kb on - strand at 1236.124 kb on + strand, within ABID97_RS05850 at 1236.329 kb on + strand, within ABID97_RS05850 at 1236.329 kb on + strand, within ABID97_RS05850 at 1236.329 kb on + strand, within ABID97_RS05850 at 1236.330 kb on - strand, within ABID97_RS05850 at 1236.521 kb on + strand, within ABID97_RS05850 at 1236.521 kb on + strand, within ABID97_RS05850 at 1236.522 kb on - strand, within ABID97_RS05850 at 1236.751 kb on + strand at 1236.755 kb on + strand at 1236.998 kb on + strand, within ABID97_RS05855 at 1236.998 kb on + strand, within ABID97_RS05855 at 1237.007 kb on + strand, within ABID97_RS05855 at 1237.007 kb on + strand, within ABID97_RS05855 at 1237.008 kb on - strand, within ABID97_RS05855 at 1237.131 kb on - strand, within ABID97_RS05855 at 1237.199 kb on + strand, within ABID97_RS05855 at 1237.199 kb on + strand, within ABID97_RS05855 at 1237.317 kb on - strand, within ABID97_RS05855 at 1237.454 kb on + strand, within ABID97_RS05855 at 1237.454 kb on + strand, within ABID97_RS05855 at 1237.454 kb on + strand, within ABID97_RS05855 at 1237.454 kb on + strand, within ABID97_RS05855 at 1237.455 kb on - strand, within ABID97_RS05855 at 1237.455 kb on - strand, within ABID97_RS05855 at 1237.683 kb on - strand, within ABID97_RS05855 at 1238.069 kb on + strand, within ABID97_RS05855 at 1238.069 kb on + strand, within ABID97_RS05855 at 1238.069 kb on + strand, within ABID97_RS05855 at 1238.069 kb on + strand, within ABID97_RS05855 at 1238.070 kb on - strand, within ABID97_RS05855 at 1238.417 kb on + strand at 1238.418 kb on - strand at 1238.418 kb on - strand at 1238.448 kb on - strand at 1239.014 kb on - strand at 1239.041 kb on + strand at 1239.281 kb on - strand at 1239.364 kb on + strand, within ABID97_RS05865 at 1239.508 kb on + strand, within ABID97_RS05865 at 1239.509 kb on - strand, within ABID97_RS05865
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,235,783 + -0.6 1,235,784 - +0.3 1,236,124 + ABID97_RS05850 0.20 -0.1 1,236,329 + ABID97_RS05850 0.50 +0.5 1,236,329 + ABID97_RS05850 0.50 +0.2 1,236,329 + ABID97_RS05850 0.50 +0.0 1,236,330 - ABID97_RS05850 0.50 -0.1 1,236,521 + ABID97_RS05850 0.77 -0.1 1,236,521 + ABID97_RS05850 0.77 +1.1 1,236,522 - ABID97_RS05850 0.77 +0.6 1,236,751 + -0.3 1,236,755 + +0.3 1,236,998 + ABID97_RS05855 0.14 -0.7 1,236,998 + ABID97_RS05855 0.14 -1.1 1,237,007 + ABID97_RS05855 0.15 -1.4 1,237,007 + ABID97_RS05855 0.15 -1.3 1,237,008 - ABID97_RS05855 0.15 -0.4 1,237,131 - ABID97_RS05855 0.21 -1.4 1,237,199 + ABID97_RS05855 0.25 -0.8 1,237,199 + ABID97_RS05855 0.25 -1.9 1,237,317 - ABID97_RS05855 0.32 -2.0 1,237,454 + ABID97_RS05855 0.39 -0.7 1,237,454 + ABID97_RS05855 0.39 +0.0 1,237,454 + ABID97_RS05855 0.39 -1.2 1,237,454 + ABID97_RS05855 0.39 -0.4 1,237,455 - ABID97_RS05855 0.39 -1.2 1,237,455 - ABID97_RS05855 0.39 -0.4 1,237,683 - ABID97_RS05855 0.52 +1.0 1,238,069 + ABID97_RS05855 0.74 +0.8 1,238,069 + ABID97_RS05855 0.74 -1.6 1,238,069 + ABID97_RS05855 0.74 +0.6 1,238,069 + ABID97_RS05855 0.74 -1.0 1,238,070 - ABID97_RS05855 0.74 -0.6 1,238,417 + -1.4 1,238,418 - -2.0 1,238,418 - +0.2 1,238,448 - +0.4 1,239,014 - -0.5 1,239,041 + -1.6 1,239,281 - -0.1 1,239,364 + ABID97_RS05865 0.13 +0.0 1,239,508 + ABID97_RS05865 0.19 +0.2 1,239,509 - ABID97_RS05865 0.19 -0.4
Or see this region's nucleotide sequence