Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04460 and ABID97_RS04465 overlap by 4 nucleotides ABID97_RS04465 and ABID97_RS04470 are separated by 31 nucleotides
ABID97_RS04460: ABID97_RS04460 - ABC transporter ATP-binding protein, at 923,622 to 924,653
_RS04460
ABID97_RS04465: ABID97_RS04465 - dipeptide ABC transporter ATP-binding protein, at 924,650 to 925,693
_RS04465
ABID97_RS04470: ABID97_RS04470 - ABC transporter substrate-binding protein, at 925,725 to 927,359
_RS04470
Position (kb) 924
925
926 Strain fitness (log2 ratio) -1
0
1 at 924.043 kb on + strand, within ABID97_RS04460 at 924.306 kb on + strand, within ABID97_RS04460 at 924.306 kb on + strand, within ABID97_RS04460 at 924.306 kb on + strand, within ABID97_RS04460 at 924.306 kb on + strand, within ABID97_RS04460 at 924.307 kb on - strand, within ABID97_RS04460 at 924.307 kb on - strand, within ABID97_RS04460 at 924.369 kb on + strand, within ABID97_RS04460 at 924.498 kb on + strand, within ABID97_RS04460 at 924.499 kb on - strand, within ABID97_RS04460 at 924.704 kb on + strand at 924.704 kb on + strand at 924.704 kb on + strand at 924.704 kb on + strand at 924.704 kb on + strand at 924.705 kb on - strand at 924.705 kb on - strand at 925.112 kb on + strand, within ABID97_RS04465 at 925.283 kb on + strand, within ABID97_RS04465 at 925.283 kb on + strand, within ABID97_RS04465 at 925.346 kb on + strand, within ABID97_RS04465 at 925.346 kb on + strand, within ABID97_RS04465 at 925.347 kb on - strand, within ABID97_RS04465 at 925.409 kb on + strand, within ABID97_RS04465 at 925.410 kb on - strand, within ABID97_RS04465 at 925.843 kb on - strand at 925.872 kb on + strand at 925.923 kb on + strand, within ABID97_RS04470 at 926.014 kb on - strand, within ABID97_RS04470 at 926.014 kb on - strand, within ABID97_RS04470 at 926.169 kb on + strand, within ABID97_RS04470 at 926.290 kb on - strand, within ABID97_RS04470 at 926.314 kb on - strand, within ABID97_RS04470 at 926.314 kb on - strand, within ABID97_RS04470 at 926.385 kb on + strand, within ABID97_RS04470 at 926.397 kb on + strand, within ABID97_RS04470 at 926.439 kb on + strand, within ABID97_RS04470 at 926.625 kb on + strand, within ABID97_RS04470 at 926.634 kb on + strand, within ABID97_RS04470
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 924,043 + ABID97_RS04460 0.41 +0.6 924,306 + ABID97_RS04460 0.66 -0.2 924,306 + ABID97_RS04460 0.66 -0.3 924,306 + ABID97_RS04460 0.66 +0.3 924,306 + ABID97_RS04460 0.66 +0.1 924,307 - ABID97_RS04460 0.66 +0.6 924,307 - ABID97_RS04460 0.66 +0.6 924,369 + ABID97_RS04460 0.72 -0.1 924,498 + ABID97_RS04460 0.85 +0.3 924,499 - ABID97_RS04460 0.85 -0.2 924,704 + -0.3 924,704 + -0.9 924,704 + +1.3 924,704 + +0.3 924,704 + -0.6 924,705 - +0.5 924,705 - -0.1 925,112 + ABID97_RS04465 0.44 +0.2 925,283 + ABID97_RS04465 0.61 +0.7 925,283 + ABID97_RS04465 0.61 -0.6 925,346 + ABID97_RS04465 0.67 -0.5 925,346 + ABID97_RS04465 0.67 -1.1 925,347 - ABID97_RS04465 0.67 +0.6 925,409 + ABID97_RS04465 0.73 +0.8 925,410 - ABID97_RS04465 0.73 -0.5 925,843 - -0.7 925,872 + -0.3 925,923 + ABID97_RS04470 0.12 -0.0 926,014 - ABID97_RS04470 0.18 -0.2 926,014 - ABID97_RS04470 0.18 -0.2 926,169 + ABID97_RS04470 0.27 -0.3 926,290 - ABID97_RS04470 0.35 +0.5 926,314 - ABID97_RS04470 0.36 -0.2 926,314 - ABID97_RS04470 0.36 -0.5 926,385 + ABID97_RS04470 0.40 -1.0 926,397 + ABID97_RS04470 0.41 +0.0 926,439 + ABID97_RS04470 0.44 +0.1 926,625 + ABID97_RS04470 0.55 +0.0 926,634 + ABID97_RS04470 0.56 -0.4
Or see this region's nucleotide sequence