Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03660 and ABID97_RS03665 are separated by 87 nucleotides ABID97_RS03665 and ABID97_RS03670 are separated by 10 nucleotides ABID97_RS03670 and ABID97_RS03675 are separated by 12 nucleotides ABID97_RS03675 and ABID97_RS03680 are separated by 75 nucleotides
ABID97_RS03660: ABID97_RS03660 - glycolate oxidase subunit GlcF, at 753,805 to 755,037
_RS03660
ABID97_RS03665: ABID97_RS03665 - carboxypeptidase regulatory-like domain-containing protein, at 755,125 to 755,556
_RS03665
ABID97_RS03670: ABID97_RS03670 - glutathione peroxidase, at 755,567 to 756,055
_RS03670
ABID97_RS03675: ABID97_RS03675 - DMT family transporter, at 756,068 to 756,958
_RS03675
ABID97_RS03680: ABID97_RS03680 - lysophospholipid transporter LplT, at 757,034 to 758,338
_RS03680
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1
2 at 754.604 kb on - strand, within ABID97_RS03660 at 754.604 kb on - strand, within ABID97_RS03660 at 754.849 kb on + strand, within ABID97_RS03660 at 754.850 kb on - strand, within ABID97_RS03660 at 755.260 kb on + strand, within ABID97_RS03665 at 755.260 kb on + strand, within ABID97_RS03665 at 755.260 kb on + strand, within ABID97_RS03665 at 755.261 kb on - strand, within ABID97_RS03665 at 755.464 kb on + strand, within ABID97_RS03665 at 755.737 kb on - strand, within ABID97_RS03670 at 755.799 kb on + strand, within ABID97_RS03670 at 755.800 kb on - strand, within ABID97_RS03670 at 755.901 kb on + strand, within ABID97_RS03670 at 755.991 kb on + strand, within ABID97_RS03670 at 755.991 kb on + strand, within ABID97_RS03670 at 755.991 kb on + strand, within ABID97_RS03670 at 755.992 kb on - strand, within ABID97_RS03670 at 755.992 kb on - strand, within ABID97_RS03670 at 756.042 kb on + strand at 756.043 kb on - strand at 756.043 kb on - strand at 756.043 kb on - strand at 756.065 kb on - strand at 756.277 kb on - strand, within ABID97_RS03675 at 756.681 kb on + strand, within ABID97_RS03675 at 756.682 kb on - strand, within ABID97_RS03675 at 756.846 kb on + strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 754,604 - ABID97_RS03660 0.65 +0.1 754,604 - ABID97_RS03660 0.65 -0.3 754,849 + ABID97_RS03660 0.85 -0.7 754,850 - ABID97_RS03660 0.85 +0.3 755,260 + ABID97_RS03665 0.31 -2.5 755,260 + ABID97_RS03665 0.31 -0.4 755,260 + ABID97_RS03665 0.31 -0.1 755,261 - ABID97_RS03665 0.31 -0.7 755,464 + ABID97_RS03665 0.78 +0.7 755,737 - ABID97_RS03670 0.35 +0.1 755,799 + ABID97_RS03670 0.47 +1.6 755,800 - ABID97_RS03670 0.48 -0.2 755,901 + ABID97_RS03670 0.68 +0.5 755,991 + ABID97_RS03670 0.87 +0.6 755,991 + ABID97_RS03670 0.87 +0.8 755,991 + ABID97_RS03670 0.87 -0.2 755,992 - ABID97_RS03670 0.87 -0.7 755,992 - ABID97_RS03670 0.87 +1.0 756,042 + -0.3 756,043 - +1.9 756,043 - -0.5 756,043 - -0.6 756,065 - -2.0 756,277 - ABID97_RS03675 0.23 -0.1 756,681 + ABID97_RS03675 0.69 +0.8 756,682 - ABID97_RS03675 0.69 +0.1 756,846 + ABID97_RS03675 0.87 -0.1 756,847 - ABID97_RS03675 0.87 -0.5 756,847 - ABID97_RS03675 0.87 -0.2 756,847 - ABID97_RS03675 0.87 -0.3
Or see this region's nucleotide sequence