Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03635 and ABID97_RS03640 are separated by 266 nucleotides ABID97_RS03640 and ABID97_RS03645 are separated by 196 nucleotides
ABID97_RS03635: ABID97_RS03635 - ammonium transporter, at 747,206 to 748,732
_RS03635
ABID97_RS03640: ABID97_RS03640 - SMP-30/gluconolactonase/LRE family protein, at 748,999 to 749,931
_RS03640
ABID97_RS03645: ABID97_RS03645 - LysR substrate-binding domain-containing protein, at 750,128 to 751,013
_RS03645
Position (kb) 748
749
750 Strain fitness (log2 ratio) -1
0
1
2 at 748.721 kb on + strand at 748.721 kb on + strand at 748.722 kb on - strand at 748.722 kb on - strand at 748.722 kb on - strand at 748.722 kb on - strand at 748.722 kb on - strand at 748.723 kb on + strand at 748.723 kb on + strand at 748.723 kb on + strand at 748.723 kb on + strand at 748.724 kb on - strand at 748.724 kb on - strand at 748.724 kb on - strand at 748.857 kb on - strand at 748.875 kb on - strand at 748.876 kb on + strand at 748.876 kb on + strand at 748.877 kb on - strand at 748.877 kb on - strand at 748.877 kb on - strand at 748.877 kb on - strand at 749.075 kb on - strand at 749.230 kb on + strand, within ABID97_RS03640 at 749.230 kb on + strand, within ABID97_RS03640 at 749.230 kb on + strand, within ABID97_RS03640 at 749.386 kb on + strand, within ABID97_RS03640 at 749.387 kb on - strand, within ABID97_RS03640 at 749.678 kb on - strand, within ABID97_RS03640 at 750.330 kb on - strand, within ABID97_RS03645 at 750.482 kb on + strand, within ABID97_RS03645 at 750.579 kb on + strand, within ABID97_RS03645 at 750.643 kb on - strand, within ABID97_RS03645 at 750.643 kb on - strand, within ABID97_RS03645
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 748,721 + -0.4 748,721 + +0.2 748,722 - -0.1 748,722 - +0.3 748,722 - +0.7 748,722 - -0.4 748,722 - -0.1 748,723 + -0.3 748,723 + +0.3 748,723 + -0.7 748,723 + -0.3 748,724 - +0.1 748,724 - -0.0 748,724 - +2.6 748,857 - -0.0 748,875 - +1.6 748,876 + +0.9 748,876 + +0.3 748,877 - -0.6 748,877 - -0.4 748,877 - -0.1 748,877 - -1.1 749,075 - -0.4 749,230 + ABID97_RS03640 0.25 -0.7 749,230 + ABID97_RS03640 0.25 -0.6 749,230 + ABID97_RS03640 0.25 -1.5 749,386 + ABID97_RS03640 0.41 +1.1 749,387 - ABID97_RS03640 0.42 -0.0 749,678 - ABID97_RS03640 0.73 -1.3 750,330 - ABID97_RS03645 0.23 -0.2 750,482 + ABID97_RS03645 0.40 -0.2 750,579 + ABID97_RS03645 0.51 -0.1 750,643 - ABID97_RS03645 0.58 +0.2 750,643 - ABID97_RS03645 0.58 +1.1
Or see this region's nucleotide sequence