Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02845 and ABID97_RS02850 are separated by 139 nucleotides ABID97_RS02850 and ABID97_RS02855 overlap by 4 nucleotides ABID97_RS02855 and ABID97_RS02860 overlap by 4 nucleotides ABID97_RS02860 and ABID97_RS02865 overlap by 8 nucleotides
ABID97_RS02845: ABID97_RS02845 - alpha/beta fold hydrolase, at 581,793 to 582,671
_RS02845
ABID97_RS02850: ABID97_RS02850 - response regulator transcription factor, at 582,811 to 583,500
_RS02850
ABID97_RS02855: ABID97_RS02855 - sensor histidine kinase N-terminal domain-containing protein, at 583,497 to 584,891
_RS02855
ABID97_RS02860: ABID97_RS02860 - VOC family protein, at 584,888 to 585,667
_RS02860
ABID97_RS02865: ABID97_RS02865 - RidA family protein, at 585,660 to 586,145
_RS02865
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1 at 582.502 kb on + strand, within ABID97_RS02845 at 582.588 kb on + strand at 582.588 kb on + strand at 582.720 kb on - strand at 582.720 kb on - strand at 582.720 kb on - strand at 582.736 kb on + strand at 582.784 kb on + strand at 582.785 kb on - strand at 582.896 kb on + strand, within ABID97_RS02850 at 582.896 kb on + strand, within ABID97_RS02850 at 582.897 kb on - strand, within ABID97_RS02850 at 582.897 kb on - strand, within ABID97_RS02850 at 582.897 kb on - strand, within ABID97_RS02850 at 583.126 kb on + strand, within ABID97_RS02850 at 583.126 kb on + strand, within ABID97_RS02850 at 583.127 kb on - strand, within ABID97_RS02850 at 583.477 kb on + strand at 583.635 kb on + strand at 583.680 kb on + strand, within ABID97_RS02855 at 583.680 kb on + strand, within ABID97_RS02855 at 583.680 kb on + strand, within ABID97_RS02855 at 583.681 kb on - strand, within ABID97_RS02855 at 583.782 kb on + strand, within ABID97_RS02855 at 583.782 kb on + strand, within ABID97_RS02855 at 583.782 kb on + strand, within ABID97_RS02855 at 583.783 kb on - strand, within ABID97_RS02855 at 583.783 kb on - strand, within ABID97_RS02855 at 584.016 kb on + strand, within ABID97_RS02855 at 584.071 kb on - strand, within ABID97_RS02855 at 584.136 kb on + strand, within ABID97_RS02855 at 584.136 kb on + strand, within ABID97_RS02855 at 584.136 kb on + strand, within ABID97_RS02855 at 584.137 kb on - strand, within ABID97_RS02855 at 584.137 kb on - strand, within ABID97_RS02855 at 584.137 kb on - strand, within ABID97_RS02855 at 584.629 kb on - strand, within ABID97_RS02855 at 584.803 kb on - strand at 584.889 kb on + strand at 585.018 kb on + strand, within ABID97_RS02860 at 585.018 kb on + strand, within ABID97_RS02860 at 585.273 kb on + strand, within ABID97_RS02860 at 585.273 kb on + strand, within ABID97_RS02860 at 585.274 kb on - strand, within ABID97_RS02860 at 585.274 kb on - strand, within ABID97_RS02860 at 585.274 kb on - strand, within ABID97_RS02860 at 585.330 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.583 kb on - strand, within ABID97_RS02860 at 585.583 kb on - strand, within ABID97_RS02860 at 585.583 kb on - strand, within ABID97_RS02860 at 585.583 kb on - strand, within ABID97_RS02860
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 582,502 + ABID97_RS02845 0.81 -0.3 582,588 + -0.1 582,588 + -1.1 582,720 - -0.2 582,720 - -0.6 582,720 - -1.3 582,736 + -0.3 582,784 + +0.6 582,785 - -1.5 582,896 + ABID97_RS02850 0.12 -0.1 582,896 + ABID97_RS02850 0.12 -1.0 582,897 - ABID97_RS02850 0.12 -0.5 582,897 - ABID97_RS02850 0.12 +0.8 582,897 - ABID97_RS02850 0.12 -1.0 583,126 + ABID97_RS02850 0.46 +0.4 583,126 + ABID97_RS02850 0.46 -1.0 583,127 - ABID97_RS02850 0.46 -0.5 583,477 + -0.6 583,635 + +0.3 583,680 + ABID97_RS02855 0.13 -1.1 583,680 + ABID97_RS02855 0.13 -0.4 583,680 + ABID97_RS02855 0.13 -2.3 583,681 - ABID97_RS02855 0.13 -0.8 583,782 + ABID97_RS02855 0.20 -0.8 583,782 + ABID97_RS02855 0.20 -1.3 583,782 + ABID97_RS02855 0.20 -0.1 583,783 - ABID97_RS02855 0.21 -1.6 583,783 - ABID97_RS02855 0.21 +0.4 584,016 + ABID97_RS02855 0.37 -0.2 584,071 - ABID97_RS02855 0.41 -1.7 584,136 + ABID97_RS02855 0.46 +0.4 584,136 + ABID97_RS02855 0.46 -0.8 584,136 + ABID97_RS02855 0.46 -0.3 584,137 - ABID97_RS02855 0.46 -0.5 584,137 - ABID97_RS02855 0.46 -1.2 584,137 - ABID97_RS02855 0.46 +0.1 584,629 - ABID97_RS02855 0.81 -1.4 584,803 - -1.7 584,889 + +0.9 585,018 + ABID97_RS02860 0.17 -0.9 585,018 + ABID97_RS02860 0.17 -0.4 585,273 + ABID97_RS02860 0.49 -0.0 585,273 + ABID97_RS02860 0.49 -1.0 585,274 - ABID97_RS02860 0.49 -1.8 585,274 - ABID97_RS02860 0.49 +0.2 585,274 - ABID97_RS02860 0.49 -0.2 585,330 + ABID97_RS02860 0.57 +0.2 585,582 + ABID97_RS02860 0.89 +1.7 585,582 + ABID97_RS02860 0.89 +0.4 585,582 + ABID97_RS02860 0.89 +0.1 585,582 + ABID97_RS02860 0.89 +0.3 585,582 + ABID97_RS02860 0.89 +0.2 585,583 - ABID97_RS02860 0.89 -0.1 585,583 - ABID97_RS02860 0.89 -0.9 585,583 - ABID97_RS02860 0.89 +0.6 585,583 - ABID97_RS02860 0.89 -0.9
Or see this region's nucleotide sequence